3U5Z
structure of t4 bacteriophage clamp loader bound to the t4 clamp, primer-template dna, and atp analog
Total interactions analyzed 190
Total true interactions 44
Strongest Interaction Chains G-F
Int. Res. 56
Norm. En. per Res. -4.0219
Hub Node D(7)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C -45.9943 -108.3726 -438.086 -592.4529 235 64 11 20778 13 87 89
B-D 0.0 -10.8351 -14.0778 -24.9129 24 0 0 610 0 5 3
B-E 0.0 0.0 -9.1645 -9.1645 10 7 0 557 0 0 0
B-A -45.2348 39.4393 -338.165 -343.9605 127 32 10 13180 0 30 31
B-G 0.0 -24.6659 -37.1837 -61.8496 41 3 0 2108 2 14 14
B-F -7.3612 5.4919 -72.0877 -73.957 38 11 4 2664 0 4 6
C-D -25.9993 -181.2716 -448.504 -655.7749 219 71 11 20862 15 90 86
C-E 0.0 0.0 -1.2766 -1.2766 8 0 0 193 0 0 0
C-G -24.1159 0.0 -117.347 -141.4629 67 21 7 5057 0 11 8
C-N 0.0 -2.3094 -12.1952 -14.5046 33 0 0 880 0 21 20
C-R 0.0 0.0 -0.0017 -0.0017 3 0 0 2 0 4 1
D-E -33.1765 -137.1355 -460.47 -630.782 220 85 14 21419 11 84 79
D-A 0.0 0.0 -0.014 -0.014 2 0 0 14 0 0 0
D-G -6.5552 4.3746 -40.3616 -42.5421 35 18 5 2581 0 4 5
D-H 0.0 0.0 -0.4705 -0.4705 12 0 0 123 0 5 5
D-M -7.8029 -4.1324 -44.1873 -56.1226 42 6 0 2005 0 19 18
D-N 0.0 10.1155 -16.5254 -6.4099 25 7 0 1394 1 17 24
D-Q 0.0 0.0 -0.0358 -0.0358 2 0 0 5 0 2 1
E-A -25.4732 -28.6075 -265.882 -319.9627 151 54 10 14187 5 36 38
E-H 0.0 -2.4756 -41.9246 -44.4002 24 1 3 1447 0 4 4
A-F 0.0 -66.9801 -79.5127 -146.4928 67 11 7 5856 4 7 8
G-H -46.819 -33.608 -117.888 -198.315 57 9 7 5621 3 13 12
G-F -55.0985 -39.3809 -130.747 -225.2264 56 20 6 5808 3 16 13
H-F -53.1769 4.3291 -132.322 -181.1698 53 11 5 5725 0 16 11
L-M -34.1019 -113.214 -436.761 -584.077 223 56 11 19752 14 83 86
L-N 0.0 -6.3742 -4.7838 -11.158 20 0 0 317 0 3 2
L-O 0.0 0.0 -6.9432 -6.9432 10 10 0 562 0 0 0
L-K -58.8026 21.7194 -287.696 -324.7793 126 33 10 12753 0 29 30
L-Q 0.0 -3.5816 -32.7529 -36.3345 35 6 0 1799 0 13 13
L-P -26.6501 4.3205 -102.322 -124.6516 41 12 4 3174 0 4 5
M-N -31.9412 -147.055 -432.635 -611.6312 206 55 10 19670 13 85 74
M-O 0.0 0.0 -1.4235 -1.4235 8 0 0 188 0 0 0
M-Q -11.4269 0.0 -117.375 -128.8019 68 12 7 5221 0 11 6
N-O -23.2365 -131.7153 -477.019 -631.9708 217 71 12 20857 9 82 76
N-K 0.0 0.0 -0.012 -0.012 2 0 0 12 0 0 0
N-Q -6.367 8.2388 -57.8579 -55.9861 37 12 5 2596 0 4 5
N-R 0.0 -26.6254 -28.8042 -55.4296 39 3 0 2000 2 14 13
O-K -30.8391 -25.3891 -325.386 -381.6142 151 56 10 14332 6 39 38
O-R -2.9974 0.0 -101.462 -104.4594 56 2 6 4112 0 10 7
K-R 0.0 1.6414 -25.6967 -24.0553 30 0 1 1560 0 10 7
K-P -6.6886 -78.6135 -50.0202 -135.3224 62 19 8 6066 4 6 6
Q-R -33.0554 -41.5178 -128.665 -203.2382 60 7 8 6058 2 16 13
Q-P -29.7423 -19.3456 -100.474 -149.5619 59 11 6 5492 0 16 13
R-P 0.0 -0.3582 -5.4852 -5.8434 10 0 0 362 0 3 4