3U5I
the structure of the eukaryotic ribosome at 3.0 a resolution. this entry contains proteins of the 60s subunit, ribosome b
Total interactions analyzed 990
Total true interactions 82
Strongest Interaction Chains L-N
Int. Res. 36
Norm. En. per Res. -6.2633
Hub Node C(13)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-G -13.1552 0.0 -68.1436 -81.2988 37 6 4 2822 0 4 3
A-N 0.0 0.0 -2.9842 -2.9842 7 0 0 202 0 0 2
A-Z 0.0 0.0 -0.2247 -0.2247 2 0 0 29 0 0 0
A-g 0.0 -2.0505 -0.1587 -2.2092 8 0 0 71 0 2 2
A-p -51.6227 -15.217 16 ALA65p, ARG17p, ARG80p, ASP176A, GLU30p, GLU80A, GLY171A, GLY66p, GLY81A, HIS83A, LYS177A, LYS181A, LYS28p, LYS62p, THR73p, VAL82A
B-O -9.458 -7.1908 -108.987 -125.6358 47 4 1 4169 1 8 15
B-P 0.0 0.0 -0.0006 -0.0006 2 0 0 1 0 0 1
B-V -5.3164 -5.9358 -89.5709 -100.8231 51 1 2 4296 0 23 26
B-W -7.6086 -27.1775 -122.983 -157.769 71 5 1 5579 1 16 19
C-E 0.0 0.0 -0.7315 -0.7315 10 0 0 198 0 0 5
C-F -26.4834 -22.2774 -265.771 -314.5318 109 10 6 11607 2 21 31
C-L 0.0 3.9549 -47.804 -43.8491 24 2 1 1782 0 6 10
C-N -10.5803 4.3107 -71.081 -77.3506 24 3 0 2659 0 0 14
C-Q -53.643 23.5121 -262.39 -292.5209 89 21 15 12652 0 15 13
C-S -11.2748 -9.5064 -65.7256 -86.5067 27 5 1 2640 0 11 12
C-T 0.0 0.0 -18.3452 -18.3452 19 0 1 991 0 0 1
C-Y -2.254 33.6729 -22.874 8.545 23 4 0 1260 0 4 19
C-a 0.0 0.0 -0.067 -0.067 8 0 0 33 0 0 0
C-e 0.0 0.0 -0.0079 -0.0079 4 0 0 9 0 0 2
C-j -26.0504 0.0 -7.0553 -33.1056 11 3 0 575 0 0 6
D-I 0.0 -4.1607 -55.7377 -59.8984 31 1 8 3029 0 2 7
D-J -5.748 12.024 -44.0463 -37.7703 35 1 0 2262 0 11 25
D-T -35.6467 4.7248 -207.96 -238.8819 76 8 6 8610 0 7 39
D-b 0.0 0.0 -0.4507 -0.4507 7 0 0 116 0 3 3
E-M -2.3597 -42.239 -145.637 -190.2358 48 12 4 5564 2 14 14
E-O 0.0 0.0 -0.0119 -0.0119 5 0 0 11 0 0 0
E-S 0.0 0.0 -0.0291 -0.0291 4 0 0 23 0 0 1
E-e -22.4977 -9.5069 -133.912 -165.9167 47 6 5 4844 0 11 5
E-f -24.8492 -27.8709 -251.91 -304.6301 73 11 12 10025 2 11 25
F-Q -16.2038 -45.3834 -62.117 -123.7042 24 2 1 2347 3 9 8
F-S -7.6445 -2.2875 -88.0529 -97.9849 63 0 6 4045 1 11 18
F-T -69.2995 -5.0769 -163.561 -237.9374 43 10 4 6049 0 6 9
F-b 0.0 0.0 -0.0027 -0.0027 3 0 0 3 0 0 7
G-N -27.2751 -24.9297 -225.181 -277.3859 93 14 10 10443 6 32 28
G-X -21.283 0.0 -104.724 -126.007 27 5 4 4094 0 1 8
G-Z 0.0 0.0 -36.9175 -36.9175 30 1 1 1906 0 0 9
G-g 0.0 0.0 -0.0212 -0.0212 4 0 0 17 0 0 0
G-i -22.5016 -52.7039 -46.7868 -121.9924 37 5 6 2773 3 8 7
H-M -30.7486 -3.0296 -114.901 -148.6792 57 12 4 5018 0 6 10
H-O 0.0 1.351 -3.5047 -2.1537 16 0 0 253 0 7 15
H-S -15.9411 -4.5312 -67.1615 -87.6338 31 3 1 2670 0 4 11
H-m -11.0574 -8.3506 -142.062 -161.47 56 9 12 5972 0 9 16
I-S -10.7402 0.0 -7.7912 -18.5314 9 0 0 354 0 1 2
I-T -18.0327 -3.4894 -40.6632 -62.1853 24 4 1 1953 0 3 1
I-b 0.0 0.0 -0.0717 -0.0717 4 0 0 43 0 0 1
L-N -77.5787 -0.5378 -147.361 -225.4775 36 12 3 5477 0 4 22
L-Q 0.0 0.0 -45.7859 -45.7859 23 2 1 1995 0 1 4
L-Y 0.0 0.0 -0.0049 -0.0049 3 0 0 8 0 0 0
L-a -85.5968 -35.7393 -398.242 -519.5781 124 23 12 15091 9 23 45
L-h -56.7402 22.7654 -253.796 -287.7708 63 20 14 10378 0 5 11
L-i -34.9649 9.8407 -166.429 -191.5532 65 12 4 6437 0 8 22
M-O -11.3865 0.0 -167.293 -178.6795 62 3 13 8405 0 4 6
M-S -35.8221 13.1745 -253.064 -275.7116 87 12 12 10494 2 26 30
M-f 0.0 0.0 -0.0331 -0.0331 4 0 0 13 0 2 0
N-a 0.0 2.6682 -0.1798 2.4884 3 0 0 38 0 0 3
N-h -19.9944 -40.1924 -79.4197 -139.6065 40 3 1 3580 2 13 21
N-i -5.3751 7.2292 -98.6901 -96.836 41 5 5 5125 2 20 17
O-S -36.0577 -15.982 -151.019 -203.0586 63 6 5 6895 1 7 20
O-f 0.0 0.0 -29.8112 -29.8112 35 0 0 1862 0 3 12
P-d 0.0 -3.5539 -0.4639 -4.0178 5 0 0 67 0 4 4
Q-a -63.5592 -61.2224 -219.478 -344.2596 83 16 2 9145 6 33 51
Q-b 0.0 0.0 -0.3634 -0.3634 3 0 0 58 0 2 7
R-X 0.0 0.0 -0.0176 -0.0176 3 0 0 13 0 1 1
S-T -90.2877 -38.0423 -254.596 -382.9259 75 17 4 9544 2 10 8
S-f 0.0 0.0 -0.0475 -0.0475 6 0 0 17 0 2 1
T-b -26.9167 3.3762 -112.748 -136.2885 50 2 1 4513 0 7 17
V-W -40.2516 0.524 -116.061 -155.7886 48 6 6 4845 0 13 10
X-h -23.9948 -14.4355 -179.278 -217.7083 83 5 7 7749 1 16 19
X-l -18.4584 0.0 -39.3338 -57.7922 18 3 0 1962 0 0 7
Y-j 0.0 0.0 -0.0409 -0.0409 5 0 0 23 0 0 0
Y-l -4.444 0.0 -12.8525 -17.2965 10 0 0 641 0 0 1
Z-c -9.6338 -3.1757 -142.979 -155.7885 49 9 1 5434 0 10 18
Z-g -13.5648 -3.5162 -157.273 -174.3541 53 4 13 7056 0 11 21
a-e -2.9534 4.7622 -23.1698 -21.361 16 1 0 1030 0 1 15
a-i 0.0 3.2638 -49.7258 -46.462 24 3 5 2068 0 3 9
c-g 0.0 -4.3089 -62.664 -66.9729 30 4 2 2619 0 9 10
c-p 0.0 5.5486 2 ARG86c, LYS44p
e-f 0.0 6.7697 -5.8068 0.9629 6 0 0 321 0 0 3
g-l 0.0 0.0 -9.9951 -9.9951 7 0 0 370 0 0 1
h-j -4.4598 5.4944 -25.5187 -24.4841 22 0 0 1424 0 0 11
j-l 0.0 0.0 -53.713 -53.713 23 7 1 2187 0 0 16
q-r -4.9306 0.0 2 GLN195q, UNK35-4.9306142.916216