3U5G
the structure of the eukaryotic ribosome at 3.0 a resolution. this entry contains proteins of the 40s subunit, ribosome b
Total interactions analyzed 561
Total true interactions 76
Strongest Interaction Chains L-X
Int. Res. 32
Norm. En. per Res. -7.3614
Hub Node D(8)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-C -34.2948 -51.8524 -100.0 -186.1472 55 13 1 4455 3 11 15
A-R -19.5325 -29.8557 -176.869 -226.2572 90 10 13 8878 1 28 18
A-V -102.9795 -83.8681 -400.378 -587.2255 137 34 16 17363 6 38 40
A-W 0.0 0.0 -0.0022 -0.0022 2 0 0 2 0 0 1
A-b 0.0 0.0 -4.3344 -4.3344 8 0 0 262 0 1 0
B-O -76.3438 -90.3836 -171.066 -337.7934 101 19 4 8219 13 46 39
B-a 0.0 3.3043 -45.9246 -42.6203 41 0 0 2045 0 3 14
C-D 0.0 0.0 -8.8826 -8.8826 16 0 0 345 0 7 6
C-J -3.3086 -20.0954 -64.5145 -87.9185 51 4 0 3334 1 12 18
C-V -67.8653 -36.1958 -302.099 -406.1601 107 20 8 13464 2 24 15
C-W -22.4688 0.0 -135.967 -158.4358 60 7 1 4944 0 2 5
C-h 0.0 0.0 -7.609 -7.609 18 0 0 732 0 0 0
D-K -20.8946 -35.4493 -153.872 -210.216 81 11 3 7473 3 24 17
D-R -21.6083 -39.1606 -118.049 -178.8179 49 3 9 5054 2 21 11
D-U -6.8482 -22.2115 -87.0436 -116.1033 57 4 2 4712 3 17 28
D-d 0.0 -13.8302 -76.5741 -90.4043 52 1 4 3741 1 12 15
D-e 0.0 0.0 -0.3712 -0.3712 8 0 0 90 0 0 0
D-g -11.4165 -7.2916 -116.596 -135.304 42 6 6 4748 1 14 12
D-h -3.3813 0.0 -73.9646 -77.3459 46 7 0 4805 0 0 0
E-G -15.5417 -42.7851 -46.8672 -105.1939 33 11 2 2595 3 7 5
E-I 0.0 1.1242 -0.1514 0.9728 7 0 0 74 0 1 6
E-J -4.2013 2.0519 -67.0165 -69.1659 33 2 4 2983 0 6 15
E-L 0.0 0.0 -7.1605 -7.1605 13 0 0 354 0 4 2
E-Y -18.5654 11.1741 -111.512 -118.9033 54 13 7 5907 3 8 13
F-O 0.0 0.0 -2.8385 -2.8385 18 0 0 340 0 2 4
F-Q -22.2198 -37.4116 -327.388 -387.0193 115 20 13 14576 2 20 31
F-T 0.0 0.0 -0.1233 -0.1233 6 0 0 42 0 0 2
F-Z -14.8668 23.2581 -130.243 -121.8517 60 5 7 6356 0 17 16
F-c -30.6122 -57.6921 -272.929 -361.2333 98 35 6 12694 7 32 46
G-Y 0.0 0.0 -10.9762 -10.9762 12 0 0 342 0 2 8
H-N 0.0 0.0 -23.9332 -23.9332 23 0 0 1005 0 5 4
H-W -51.8939 -49.4551 -156.964 -258.313 51 5 2 5185 2 24 21
H-b 0.0 0.0 -8.5658 -8.5658 21 0 0 795 0 5 5
I-L -19.9775 -18.0822 -178.973 -217.0327 83 6 4 6673 1 30 21
J-V 0.0 0.0 -0.0734 -0.0734 3 0 0 13 0 3 2
J-W 0.0 -2.3279 -7.8047 -10.1326 11 1 0 349 0 19 15
J-Y 0.0 0.7198 -31.7847 -31.0649 26 1 1 1680 0 2 4
J-e 0.0 21.1498 -137.064 -115.9142 51 6 3 5447 2 18 28
K-M 0.0 -11.3453 -4.654 -15.9992 13 0 0 259 2 8 6
K-d -4.1526 0.0 -47.5238 -51.6764 35 1 0 2026 0 6 4
K-h 0.0 0.0 -13.6912 -13.6912 23 0 0 1004 0 0 0
L-N 0.0 0.0 -0.078 -0.078 3 0 0 12 0 0 0
L-W 0.0 0.0 -25.9246 -25.9246 17 2 0 1005 0 2 4
L-X -62.9357 -48.1572 -124.473 -235.566 32 15 5 5433 5 7 27
M-f -9.8485 4.9623 -93.2979 -98.1841 53 7 3 4639 0 14 16
M-h -6.1278 0.0 -90.8332 -96.961 34 8 0 3305 0 0 0
N-W 0.0 19.0091 -55.1003 -36.0912 18 4 0 1344 0 2 4
N-b -38.4474 1.7467 -159.705 -196.4056 63 9 5 6474 0 6 7
O-a -41.742 -41.9517 -285.643 -369.3368 105 20 10 11818 4 20 39
O-c 0.0 0.0 -0.7551 -0.7551 5 0 0 141 0 5 2
P-S -31.6147 -2.7887 -150.635 -185.0384 65 16 2 6501 0 29 32
P-d 0.0 0.0 -0.0022 -0.0022 3 0 0 2 0 0 2
P-f 0.0 0.0 -0.0944 -0.0944 6 0 0 34 0 0 0
P-h -46.3734 8.8669 -95.1546 -132.6611 50 19 1 4142 2 9 17
Q-T 0.0 -7.5079 -38.1562 -45.6641 23 0 1 1490 1 4 7
Q-U 0.0 0.0 -27.3309 -27.3309 16 3 0 785 0 2 9
Q-Z 0.0 0.0 -0.0482 -0.0482 3 0 0 27 0 4 1
Q-d 0.0 0.0 -0.7078 -0.7078 6 0 0 77 0 1 3
Q-g -13.9766 -11.6084 -67.832 -93.417 39 4 0 2943 0 17 17
Q-h 0.0 0.0 -0.7778 -0.7778 4 0 0 140 0 0 2
R-V 0.0 0.0 -0.0039 -0.0039 2 0 0 6 0 0 0
R-g -33.2758 -81.9763 -114.765 -230.0171 66 14 0 5572 9 33 35
S-T -19.1716 -33.37 -82.3634 -134.905 42 8 2 4291 3 11 8
S-Z 0.0 1.4869 -96.9235 -95.4367 50 5 6 4791 0 4 13
S-h 0.0 19.8496 -110.538 -90.6884 42 12 3 4434 3 10 26
T-Z 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 1 0
U-d -63.0389 -42.0555 -211.91 -317.0044 48 15 5 7966 3 13 17
V-W 0.0 8.3774 -49.3257 -40.9483 38 4 0 2361 0 8 16
V-b -15.0462 0.0 -94.867 -109.9132 38 6 1 3697 0 3 5
W-X 0.0 0.0 -24.284 -24.284 16 0 0 1195 0 0 2
W-b -37.0421 0.0 -122.015 -159.0571 48 13 4 5305 0 10 10
X-e -33.7166 -26.9264 -131.408 -192.0511 50 7 4 5391 1 14 19
a-c -5.2687 -17.1446 -14.9386 -37.3519 15 1 0 562 2 8 10
d-f 0.0 -16.0337 -5.6853 -21.719 6 0 0 135 1 1 0
e-h 0.0 0.0 -0.1429 -0.1429 4 0 0 28 0 0 0
f-h 0.0 0.0 -0.7369 -0.7369 8 0 0 89 0 0 0