3U5E
the structure of the eukaryotic ribosome at 3.0 a resolution. this entry contains proteins of the 60s subunit, ribosome a
Total interactions analyzed 820
Total true interactions 90
Strongest Interaction Chains L-N
Int. Res. 36
Norm. En. per Res. -5.9326
Hub Node C(13)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
Download
Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-G -14.407 0.0 -66.2949 -80.7019 35 3 4 2992 0 4 2
A-N 0.0 0.0 -2.0568 -2.0568 7 0 0 177 0 0 2
A-Z 0.0 0.0 -0.1464 -0.1464 2 0 0 21 0 0 0
A-g 0.0 0.0 -0.0837 -0.0837 9 0 0 51 0 1 0
A-p -83.9829 -13.7419 24 ALA65p, ALA68p, ARG174A, ARG17p, ARG184A, ARG80p, ASP176A, GLU30p, GLU80A, GLY171A, GLY172A, GLY66p, GLY81A, HIS83A, LYS177A, LYS181A, LYS28p, LYS62p, THR63p, THR73p, THR84A, TYR14p, TYR69p, VAL82A
B-O -10.5097 2.2602 288.256 280.0065 72 38 1 4516 0 9 15
B-P 0.0 0.0 -0.0047 -0.0047 2 0 0 5 0 0 1
B-V -4.6069 -16.1013 -101.481 -122.1891 56 5 2 4686 1 23 30
B-W -12.7159 -29.7406 -110.801 -153.2574 66 2 1 5304 2 15 18
C-E 0.0 0.0 -0.4847 -0.4847 10 0 0 181 0 0 7
C-F -18.5789 -22.6105 -269.092 -310.2814 105 10 6 11705 1 22 34
C-L 0.0 0.0 -47.8332 -47.8332 24 1 1 1718 0 7 11
C-N -20.7887 3.4157 -66.7148 -84.0878 25 2 0 2614 0 0 14
C-Q -54.043 23.0277 -270.178 -301.1933 91 13 15 13023 0 15 15
C-S -19.3107 -16.5806 -47.6043 -83.4956 29 10 1 2571 1 11 12
C-T 0.0 0.0 -18.3928 -18.3928 19 3 1 991 0 0 1
C-Y -3.2314 35.5526 -28.4315 3.8897 22 1 0 1253 0 4 19
C-a 0.0 0.0 -0.1054 -0.1054 8 0 0 53 0 0 0
C-e 0.0 0.0 -0.0056 -0.0056 2 0 0 4 0 0 2
C-j -15.551 0.0 -6.4621 -22.0131 13 4 0 581 0 0 6
D-I 0.0 -3.3001 -36.1161 -39.4162 29 5 5 2129 0 2 7
D-J -6.5268 14.6443 -47.4231 -39.3056 37 2 0 2469 0 10 22
D-T -26.4048 5.5615 -205.131 -225.9742 77 7 6 8578 0 7 38
D-b 0.0 0.0 -0.6284 -0.6284 7 0 0 149 0 3 3
E-M -39.2898 -43.6557 -116.96 -199.9055 48 11 3 5397 2 15 13
E-O 0.0 0.0 -0.0761 -0.0761 5 0 0 24 0 0 0
E-P 0.0 0.0 -0.905 -0.905 15 0 0 214 0 3 9
E-S 0.0 0.0 -0.0814 -0.0814 2 0 0 33 0 0 1
E-e -10.8568 -10.9075 -123.25 -145.0143 46 4 4 4657 0 12 5
E-f -39.8871 -23.5325 -254.207 -317.6265 72 8 11 10225 2 11 24
F-Q -10.2278 -40.5095 -65.0254 -115.7627 25 4 1 2405 3 9 7
F-S -6.5383 -6.9856 -84.4295 -97.9534 60 4 7 3902 2 13 17
F-T -77.7233 -4.1596 -159.529 -241.4118 46 13 4 6004 0 6 11
F-b 0.0 0.0 -0.0027 -0.0027 6 0 0 8 0 0 7
G-N -33.8549 -13.5653 -233.126 -280.5462 92 7 11 10431 6 32 26
G-X -25.7263 0.0 -95.611 -121.3373 27 4 4 3740 0 1 8
G-Z 0.0 0.0 -33.286 -33.286 30 1 1 1757 0 0 9
G-g 0.0 0.0 -0.0064 -0.0064 3 0 0 4 0 0 0
G-i -13.0226 -52.1762 -30.2235 -95.4223 37 4 6 2885 2 7 7
H-M -21.6723 -3.4227 -131.722 -156.817 58 14 3 5208 0 7 11
H-O 0.0 0.5345 -2.7334 -2.1989 15 0 0 227 0 7 14
H-S -13.2237 -4.5672 -59.8891 -77.68 31 8 1 2517 0 4 11
H-m -7.4784 1.7053 -144.395 -150.1681 58 5 7 6473 0 14 27
I-S -11.387 0.0 -10.1341 -21.5211 10 0 0 413 0 2 2
I-T -7.8228 -7.4746 -40.3296 -55.627 27 5 1 2148 0 2 1
I-b 0.0 0.0 -0.1562 -0.1562 4 0 0 64 0 0 1
J-o -7.3139 0.0 0.0 -7.3139 2 0 0 0 0 0 0
L-N -66.8676 -0.2642 -146.441 -213.5728 36 10 3 5455 0 4 24
L-Q 0.0 0.0 -49.7041 -49.7041 23 1 0 2019 0 1 4
L-Y 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
L-a -42.2724 -29.5436 -399.558 -471.3741 126 18 13 15228 5 23 44
L-h -34.3769 9.2684 -268.637 -293.7455 63 21 14 10503 0 5 12
L-i -11.7197 7.5045 -153.091 -157.3062 64 11 5 6213 0 8 21
M-O -27.5876 0.0 -183.043 -210.6306 61 4 12 8730 0 5 7
M-S -48.879 -7.4446 -243.667 -299.9906 83 9 11 10317 2 27 33
M-f 0.0 0.0 -0.0318 -0.0318 2 0 0 11 0 2 0
N-a 0.0 2.6413 -0.1725 2.4688 3 0 0 36 0 0 3
N-h -16.2321 -38.8707 -83.2477 -138.3505 39 5 1 3938 1 14 21
N-i 0.0 3.6697 -106.292 -102.6223 43 4 5 5197 1 18 18
N-j 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 0 1
N-o 0.0 0.0 -41.5115 -41.5115 21 0 0 1331 0 0 0
O-S -39.039 -15.9208 -133.532 -188.4918 66 7 5 7062 1 6 20
O-V 0.0 0.0 -1.625 -1.625 4 0 0 50 0 0 0
O-f 0.0 0.0 -31.2879 -31.2879 34 0 0 1904 0 1 11
O-m 0.0 0.0 -0.0283 -0.0283 2 0 0 11 0 0 1
P-d 0.0 0.0 -0.0334 -0.0334 4 0 0 11 0 4 5
P-f -16.6145 0.0 -27.8453 -44.4598 19 7 0 1466 0 4 9
P-j 0.0 0.0 -0.0009 -0.0009 3 0 0 3 0 0 1
Q-a -49.0643 -74.4679 -211.088 -334.6202 86 15 2 9046 6 33 52
Q-b 0.0 0.0 -0.6172 -0.6172 3 0 0 103 0 2 7
R-X 0.0 0.0 -0.001 -0.001 3 0 0 3 0 1 1
S-T -76.7829 -37.147 -226.916 -340.8459 76 14 4 9341 3 11 8
S-f 0.0 0.0 -0.0623 -0.0623 6 0 0 23 0 2 1
T-b -14.4226 1.8755 -109.608 -122.155 53 5 1 4514 0 7 16
V-W -36.8251 0.0141 -118.531 -155.3419 50 6 6 4864 0 13 11
X-h 0.0 -16.053 -178.16 -194.213 81 7 7 7804 1 14 19
X-l -14.1748 0.0 -42.6084 -56.7832 19 3 0 1995 0 0 8
Y-j 0.0 0.0 -1.292 -1.292 6 0 1 120 0 0 0
Y-l 0.0 0.0 -10.4274 -10.4274 11 0 0 536 0 0 1
Z-c -9.9131 -2.9062 -137.265 -150.0842 50 11 1 5471 0 10 18
Z-g -20.3792 4.7516 -151.86 -167.4875 54 13 12 7106 0 12 22
a-e 0.0 4.4599 -24.7123 -20.2524 16 1 0 1046 0 1 15
a-i 0.0 0.0 -40.8497 -40.8497 24 0 4 1821 0 3 8
a-o 0.0 0.0 -11.3396 -11.3396 7 1 0 438 0 0 3
c-g -9.4839 0.0 -60.6142 -70.0981 30 4 2 2624 0 9 10
c-p -5.1431 4.7699 4 ARG86c, ASN75c, GLY43p, LYS44p
e-f 0.0 7.7307 -6.069 1.6617 5 0 0 328 0 0 3
g-l 0.0 0.0 -7.9324 -7.9324 6 1 0 327 0 0 1
h-j 0.0 5.8552 -27.8471 -21.9919 22 0 1 1493 0 0 13
j-l 0.0 0.0 -44.666 -44.666 21 4 1 2022 0 0 15