3U5C
the structure of the eukaryotic ribosome at 3.0 a resolution. this entry contains proteins of the 40s subunit, ribosome a
Total interactions analyzed 561
Total true interactions 78
Strongest Interaction Chains U-d
Int. Res. 51
Norm. En. per Res. -5.8918
Hub Node D(8)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-C -13.0997 -37.6768 -113.389 -164.1655 61 5 1 4517 3 11 13
A-R 0.0 -20.0299 -182.541 -202.5709 106 10 9 8991 2 28 23
A-V -72.0787 -55.3567 -342.459 -469.8944 133 50 14 15665 3 36 37
A-W 0.0 0.0 -0.0049 -0.0049 2 0 0 4 0 0 1
A-b 0.0 0.0 -4.5675 -4.5675 7 0 0 278 0 0 1
B-O -11.9982 -83.1942 -125.329 -220.5215 88 16 3 7177 6 52 39
B-R 0.0 0.0 -0.0067 -0.0067 2 0 0 4 0 0 0
B-a 0.0 1.7885 -47.9323 -46.1438 40 6 0 2488 0 3 14
C-D 0.0 17.7678 -8.0606 9.7072 20 0 0 478 0 8 10
C-J 0.0 -10.2914 -60.0855 -70.3769 47 6 0 3020 0 12 17
C-V -62.2874 -29.1158 -309.237 -400.6402 105 21 8 13583 2 25 14
C-W -9.1289 0.0 -136.903 -146.0319 57 6 1 5100 0 2 4
C-h -15.768 18.1511 -49.3822 -46.9991 31 5 2 2256 0 20 9
D-K -12.0731 -40.3431 -185.031 -237.4472 75 14 4 7911 6 23 15
D-R -29.4394 -22.5002 -115.719 -167.6586 45 3 8 5032 1 17 5
D-U -8.6258 -26.0907 -63.1402 -97.8566 53 10 2 4478 3 16 26
D-d -8.6199 -24.467 -87.4702 -120.5571 50 1 6 4091 1 13 16
D-e 0.0 0.0 -0.1788 -0.1788 5 0 0 52 0 0 0
D-g -28.9126 -26.2717 -136.404 -191.5882 46 5 6 4979 3 14 13
D-h -32.2813 -191.5607 -261.832 -485.6739 95 10 5 9947 9 46 43
E-G -3.141 -34.1157 -60.623 -97.8797 31 3 2 2350 3 7 5
E-I 0.0 0.0 -0.2389 -0.2389 7 0 0 92 0 1 6
E-J 0.0 2.1595 -60.2092 -58.0497 35 1 4 3029 0 5 15
E-L 0.0 0.0 -4.2765 -4.2765 11 0 0 274 0 2 2
E-Y -17.3069 9.9976 -130.252 -137.5612 54 9 8 5935 3 8 13
F-O 0.0 0.0 -0.1647 -0.1647 8 0 0 37 0 1 3
F-Q -2.8484 -39.3804 -295.112 -337.3408 109 29 12 14444 3 23 34
F-T 0.0 0.0 -0.0105 -0.0105 6 0 0 12 0 0 3
F-Z -13.8564 26.4408 -127.753 -115.1686 59 9 6 6734 2 14 18
F-a 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 1 1
F-c -33.2959 -19.2347 -297.263 -349.7936 98 27 6 12680 4 29 48
G-Y 0.0 0.0 -10.3044 -10.3044 13 0 0 332 0 3 9
H-N 0.0 -6.0197 -25.5556 -31.5753 24 0 1 1046 0 5 4
H-W -45.2558 -57.4955 -144.761 -247.5122 50 7 2 5114 3 23 20
H-b 0.0 0.0 -9.5668 -9.5668 19 0 0 878 0 6 6
I-L -58.8653 -65.6105 -169.785 -294.2608 80 15 4 7030 6 32 21
J-V 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 3 4
J-W 0.0 -14.0445 -8.7332 -22.7778 12 1 0 387 0 19 12
J-Y -4.3215 0.7465 -38.6802 -42.2553 25 2 1 1859 0 3 5
J-e 0.0 23.9433 -133.536 -109.5927 50 5 3 5442 0 17 30
K-M 0.0 -4.8663 -8.4797 -13.346 15 2 0 441 0 9 7
K-d -3.753 -9.8334 -53.6444 -67.2308 36 1 0 2106 1 6 7
K-h 0.0 0.0 -31.0197 -31.0197 28 1 0 1862 0 0 0
L-N 0.0 0.0 -8.874 -8.874 24 0 1 645 0 2 4
L-W 0.0 0.0 -19.0014 -19.0014 16 3 0 885 0 2 4
L-X -24.3404 -39.6151 -120.433 -184.3885 32 10 5 5321 3 7 25
M-f -16.4407 -0.6333 -72.5081 -89.5822 53 11 4 5167 0 13 18
M-h 0.0 0.0 -49.7713 -49.7713 33 11 0 2811 0 0 0
N-W -6.0178 18.6413 -45.9867 -33.3632 22 5 0 1412 0 2 4
N-b -9.8167 1.7689 -165.832 -173.8798 62 7 4 6615 0 7 7
O-a -72.8551 -23.4937 -264.044 -360.3928 107 24 8 11234 4 20 39
O-c 0.0 0.0 -0.0158 -0.0158 3 0 0 15 0 0 1
P-S -11.0911 -6.9067 -149.674 -167.6718 68 16 2 6324 0 29 32
P-d 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 0 1
P-h -51.7339 -27.0582 -92.3203 -171.1124 48 10 1 3997 2 9 19
Q-T -6.2424 -6.6945 -31.3753 -44.3122 28 2 1 1414 0 3 7
Q-U 0.0 0.0 -24.2045 -24.2045 17 0 0 765 0 3 9
Q-Z -7.5732 0.0 -2.5685 -10.1417 6 0 0 109 1 4 2
Q-d 0.0 0.0 -0.7339 -0.7339 5 0 0 78 0 1 2
Q-g -12.809 -14.0252 -46.7372 -73.5714 40 5 0 2835 0 16 14
Q-h 0.0 17.8168 -8.1698 9.647 5 1 0 272 0 0 3
R-V 0.0 0.0 -0.0217 -0.0217 3 0 0 14 0 0 0
R-g -17.8204 -40.7857 -107.866 -166.4721 64 12 0 5185 7 31 33
S-T -2.8053 -20.3828 -81.3639 -104.552 43 5 1 4000 1 12 9
S-Z 0.0 4.5311 -104.907 -100.3759 50 3 6 4561 0 4 11
S-h -5.8676 3.4769 -101.269 -103.6597 65 21 3 5870 2 9 25
T-Z 0.0 0.0 -0.0045 -0.0045 2 0 0 5 0 2 0
U-d -47.5877 -34.8258 -218.066 -300.4795 51 14 5 7941 3 13 18
V-W -14.6631 2.1125 -43.2117 -55.7623 34 3 0 2127 0 7 15
V-b -23.3996 0.0 -107.74 -131.1396 40 7 0 3818 0 3 5
W-X 0.0 0.0 -24.1899 -24.1899 15 0 0 1129 0 0 2
W-b -24.0017 0.0 -121.378 -145.3797 49 14 5 5426 0 10 13
X-e -35.6534 -20.5452 -137.337 -193.5357 49 8 4 5462 1 14 18
X-h 0.0 0.0 -0.0642 -0.0642 4 0 0 23 0 0 0
a-c 0.0 0.0 -0.7028 -0.7028 3 0 0 102 0 7 6
d-f 0.0 -4.1122 -0.0387 -4.1509 4 0 0 23 0 1 0
e-h 0.0 1.1494 -3.8858 -2.7364 12 0 0 504 0 4 4
f-h 0.0 0.0 -6.9742 -6.9742 16 0 0 611 0 0 0