3U30

crystal structure of a linear-specific ubiquitin fab bound to linear ubiquitin

• Total interactions analyzed: 15
• Total true interactions: 9
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 76
  • Norm. En. per Res.: -3.6922
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-52.2743	-52.2743	30	2	0	1739	0	2	1
A-C	-51.227	1.3532	-230.736	-280.6098	76	5	3	8939	0	6	4
B-C	-25.3503	-2.8316	-463.744	-491.9259	189	16	14	19094	0	17	16
B-E	0.0	0.0	-0.1383	-0.1383	5	0	0	37	0	3	4
C-E	-32.8061	7.0944	-86.9191	-112.6309	48	4	1	3935	0	9	9
C-F	-3.2538	0.0	-20.2714	-23.5252	16	2	0	805	0	0	1
D-E	0.0	0.0	-39.5983	-39.5983	28	0	0	1445	0	2	1
D-F	-29.6773	0.0589	-209.233	-238.8514	73	13	3	8653	0	6	5
E-F	-30.3373	-11.2613	-459.55	-501.1486	197	17	13	19269	1	15	17

Interface residues

• A-B: ALA32B, ALA51B, ASP32A, GLN31A, GLN40A, GLU34A, GLY10A, GLY35A, GLY57B, ILE30A, ILE36A, LEU46B, LEU54B, LEU8A, LYS11A, LYS29A, LYS33A, LYS52B, PHE53B, PRO37A, SER30B, SER50B, SER56B, SER91B, THR31B, THR7A, THR9A, TYR49B, TYR55B, TYR92B
• A-C: ALA71C, ARG130A, ARG42A, ARG72A, ARG74A, ARG94C, ARG99C, ASN136A, ASN31C, ASN76C, ASP101C, ASP134A, ASP39A, ASP72C, GLN138A, GLN31A, GLN40A, GLN41A, GLN49A, GLN56C, GLN78A, GLU140A, GLU34A, GLU94A, GLY10A, GLY35A, GLY55C, GLY75A, GLY76A, ILE137A, ILE34C, ILE36A, ILE44A, ILE51C, ILE79A, LEU132A, LEU69A, LEU71A, LEU73A, LEU8A, LEU97C, LEU98C, LYS11A, LYS139A, LYS75C, MET77A, PHE27C, PHE29C, PRO37A, PRO52C, PRO95A, SER133A, SER141A, SER30C, SER53C, SER54C, SER74C, SER96A, THR131A, THR28C, THR32C, THR52C, THR57C, THR73C, THR7A, THR95C, THR9A, TRP100C, TRP96C, TYR135A, TYR33C, TYR59C, VAL100C, VAL2C, VAL70A, VAL93A
• B-C: ALA125C, ALA130B, ALA136C, ALA137C, ALA168C, ALA32B, ALA34B, ALA43B, ALA49C, ALA51B, ALA60C, ALA93C, ARG142B, ARG211B, ARG38C, ARG94C, ARG99C, ASN137B, ASN138B, ASN158B, ASN210B, ASP101C, ASP122B, ASP144C, ASP167B, ASP170B, ASP1B, ASP58C, ASP61C, CYS134B, CYS140C, CYS88B, CYS92C, GLN100B, GLN105C, GLN124B, GLN160B, GLN166B, GLN171C, GLN37B, GLN38B, GLN39C, GLN89B, GLN90B, GLU123B, GLU161B, GLU165B, GLU46C, GLU6C, GLY101B, GLY104C, GLY106C, GLY128B, GLY133C, GLY139C, GLY157B, GLY162C, GLY41B, GLY42C, GLY44C, GLY99B, HIS164C, ILE117B, ILE48B, LEU102C, LEU124C, LEU125B, LEU135B, LEU136B, LEU138C, LEU141C, LEU170C, LEU175B, LEU175C, LEU178C, LEU179B, LEU181B, LEU45C, LEU46B, LEU47B, LEU54B, LEU97C, LEU98C, LYS126B, LYS129C, LYS143C, LYS169B, LYS207B, LYS209C, LYS39B, LYS42B, LYS43C, LYS45B, MET100C, PHE116B, PHE118B, PHE122C, PHE139B, PHE166C, PHE209B, PHE53B, PHE98B, PRO113B, PRO119B, PRO120B, PRO123C, PRO126C, PRO167C, PRO40B, PRO44B, PRO95B, PRO96B, SER114B, SER120C, SER121B, SER127B, SER127C, SER128C, SER130C, SER131B, SER132C, SER159B, SER161C, SER162B, SER168B, SER172C, SER173C, SER174B, SER176B, SER177B, SER177C, SER179C, SER180C, SER208B, SER35C, SER50B, SER50C, SER56B, SER62C, SER91B, THR129B, THR131C, THR135C, THR164B, THR165C, THR172B, THR178B, THR180B, THR183C, THR31B, THR85B, THR93B, THR94B, THR95C, THR97B, TRP100C, TRP103C, TRP35B, TRP36C, TRP47C, TRP96C, TYR173B, TYR176C, TYR36B, TYR49B, TYR55B, TYR59C, TYR86B, TYR87B, TYR91C, TYR92B, VAL100C, VAL115B, VAL121C, VAL132B, VAL133B, VAL142C, VAL163B, VAL163C, VAL169C, VAL181C, VAL182C, VAL184C, VAL211C, VAL2C, VAL33B, VAL37C, VAL48C, VAL89C
• B-E: GLU123B, GLU161E, GLY157E, LYS126B, SER156E
• C-E: ALA153E, ALA158C, ASN152E, ASN155C, ASN158E, ASN197C, ASN204C, ASP151E, ASP185E, ASP208C, CYS196C, GLN147E, GLN155E, GLN160E, GLN192C, GLU212C, GLY118C, GLY128E, GLY157E, HIS189E, ILE195C, LEU154E, LEU179E, LEU181E, LYS149E, LYS188E, LYS206C, LYS209C, LYS210C, PHE122C, PRO119C, PRO123C, SER120C, SER156C, SER156E, SER159E, SER182E, THR129E, THR180E, THR193C, THR205C, TRP148E, TYR194C, VAL121C, VAL150E, VAL198C, VAL207C, VAL211C
• C-F: ALA125C, GLN171F, GLU212C, GLY174F, GLY190C, LEU170F, LEU175F, LEU189C, LYS143F, LYS210C, PRO126C, PRO213C, SER172F, SER173F, THR191C, VAL211C
• D-E: ALA32E, ALA51E, ASP32D, GLN31D, GLN40D, GLU34D, GLY10D, GLY35D, GLY57E, ILE30D, ILE36D, LEU46E, LEU54E, LYS11D, LYS33D, LYS52E, PHE53E, PRO37D, SER30E, SER50E, SER56E, SER91E, THR31E, THR7D, THR9D, TYR49E, TYR55E, TYR92E
• D-F: ALA71F, ARG42D, ARG72D, ARG74D, ARG94F, ARG99F, ASN136D, ASN31F, ASP101F, ASP134D, ASP39D, ASP58F, ASP72F, GLN138D, GLN31D, GLN40D, GLN41D, GLN56F, GLN78D, GLU140D, GLU34D, GLU92D, GLU94D, GLY10D, GLY35D, GLY55F, GLY75D, GLY76D, ILE137D, ILE34F, ILE36D, ILE44D, ILE51F, ILE79D, LEU132D, LEU69D, LEU71D, LEU73D, LEU8D, LEU97F, LEU98F, LYS11D, LYS139D, MET77D, PHE27F, PHE29F, PRO37D, PRO52F, PRO95D, SER133D, SER141D, SER30F, SER53F, SER54F, SER74F, SER96D, THR131D, THR28F, THR32F, THR52F, THR57F, THR73F, THR7D, THR95F, THR9D, TRP100F, TRP96F, TYR135D, TYR33F, TYR59F, VAL100F, VAL70D, VAL93D
• E-F: ALA125F, ALA130E, ALA136F, ALA137F, ALA168F, ALA193E, ALA32E, ALA34E, ALA40F, ALA43E, ALA49F, ALA51E, ALA60F, ALA93F, ARG142E, ARG211E, ARG38F, ARG94F, ARG99F, ASN137E, ASN138E, ASN158E, ASN210E, ASP101F, ASP122E, ASP144F, ASP167E, ASP170E, ASP1E, ASP58F, ASP61F, CYS134E, CYS140F, CYS194E, CYS88E, CYS92F, GLN100E, GLN105F, GLN124E, GLN160E, GLN166E, GLN171F, GLN37E, GLN38E, GLN39F, GLN3F, GLN6E, GLN89E, GLN90E, GLU123E, GLU161E, GLU165E, GLU46F, GLU6F, GLY101E, GLY104F, GLY106F, GLY128E, GLY133F, GLY139F, GLY157E, GLY162F, GLY41E, GLY42F, GLY44F, GLY99E, HIS164F, ILE117E, ILE48E, LEU102F, LEU124F, LEU125E, LEU135E, LEU136E, LEU138F, LEU141F, LEU170F, LEU175E, LEU175F, LEU178F, LEU179E, LEU181E, LEU45F, LEU46E, LEU47E, LEU97F, LEU98F, LYS103E, LYS126E, LYS129F, LYS143F, LYS169E, LYS207E, LYS209F, LYS210F, LYS39E, LYS42E, LYS43F, LYS45E, LYS64F, MET100F, PHE116E, PHE118E, PHE122F, PHE139E, PHE166F, PHE209E, PHE53E, PHE98E, PRO119E, PRO120E, PRO123F, PRO126F, PRO167F, PRO213F, PRO40E, PRO44E, PRO95E, PRO96E, SER114E, SER120F, SER121E, SER127E, SER127F, SER128F, SER130F, SER131E, SER132F, SER159E, SER162E, SER168E, SER172F, SER173F, SER174E, SER176E, SER177E, SER177F, SER179F, SER180F, SER208E, SER35F, SER50E, SER50F, SER56E, SER91E, THR129E, THR131F, THR135F, THR164E, THR165F, THR172E, THR178E, THR180E, THR183F, THR206E, THR31E, THR57F, THR85E, THR93E, THR94E, THR95F, THR97E, TRP100F, TRP103F, TRP35E, TRP36F, TRP47F, TRP96F, TYR173E, TYR176F, TYR192E, TYR36E, TYR49E, TYR55E, TYR59F, TYR86E, TYR87E, TYR91F, TYR92E, VAL100F, VAL115E, VAL121F, VAL132E, VAL133E, VAL142F, VAL163E, VAL163F, VAL169F, VAL181F, VAL182F, VAL184F, VAL207F, VAL211F, VAL33E, VAL37F, VAL48F, VAL89F