3TMP
the catalytic domain of human deubiquitinase duba in complex with ubiquitin aldehyde
Total interactions analyzed 28
Total true interactions 16
Strongest Interaction Chains C-D
Int. Res. 98
Norm. En. per Res. -5.0209
Hub Node A(5)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -56.8184 -75.9896 -313.943 -446.7511 92 8 4 10767 6 32 33
A-C -8.5501 -6.3357 -82.1037 -96.9895 50 6 3 3380 1 20 24
A-D 0.0 0.0 -0.0006 -0.0006 2 0 0 2 0 0 1
A-E -6.1776 1.3452 -30.8047 -35.6371 25 0 0 838 0 0 6
A-F -10.7649 -38.6406 -57.6944 -107.0999 39 2 2 2935 3 10 10
B-C -4.1453 -6.2785 -18.448 -28.8718 16 0 0 774 0 5 4
B-E -12.0978 -37.9479 -52.592 -102.6377 39 3 2 2969 3 8 10
B-G -8.4772 -15.2834 -2.4603 -26.2208 6 2 0 117 1 4 4
C-D -69.6127 -78.6017 -343.831 -492.0454 98 10 4 11290 6 33 32
C-E -11.1789 -20.5512 -37.2877 -69.0179 19 2 1 1259 2 4 5
C-F 0.0 0.5261 -20.4028 -19.8767 24 0 0 1195 0 7 6
C-H -9.2256 -4.2703 -80.3725 -93.8684 50 5 0 3126 0 16 15
D-E 0.0 0.0 -0.4553 -0.4553 8 0 0 80 0 3 4
D-G -11.4793 -1.9413 -50.7072 -64.1279 33 2 0 1939 0 9 12
E-F -59.141 -74.3374 -337.697 -471.1754 99 14 5 11582 5 33 33
G-H -54.5445 -76.3994 -313.583 -444.5268 90 11 4 10702 5 31 32