3T5Q

3a structure of lassa virus nucleoprotein in complex with ssrna

• Total interactions analyzed: 66
• Total true interactions: 9
• Strongest Interaction:
  • Chains: B-E
  • Int. Res.: 51
  • Norm. En. per Res.: -2.3124
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-9.1625	-1.4113	-90.9765	-101.5503	51	6	2	3825	0	18	16
A-E	-8.2063	-2.9571	-25.1471	-36.3105	30	1	0	1238	0	11	9
A-G	-11.3351	-0.3794	-92.0319	-103.7464	49	6	2	3976	0	18	16
A-I	-50.7478	5.5492	-75.5143	-120.7129	62	16	2	5742	3	30	23
A-K	0.0	0.0	-76.0759	-76.0759	57	1	5	4421	0	8	7
B-E	-4.5688	-25.385	-87.9791	-117.9329	51	1	4	4466	2	8	8
B-G	-8.2046	-0.459	-82.6216	-91.2851	48	5	2	3699	0	18	17
E-K	-8.7943	-8.1124	92.7964	75.8897	50	25	0	3649	1	17	17
I-K	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0

Interface residues

• A-B: ALA185A, ALA198B, ALA35B, ALA37A, ALA73A, ASN196B, ASN26B, ASN75A, ASN76A, ASP194B, ASP197B, ASP204B, ASP260B, ASP34A, ASP43A, GLN200B, GLN30B, GLN36A, GLN36B, GLN72A, GLU46A, GLU79A, GLY261B, GLY41A, HIS226B, HIS40A, HIS40B, ILE27B, LEU184B, LEU195B, LEU259B, LEU29B, LEU38A, LEU39A, LEU39B, LEU42A, LEU77A, LYS189A, LYS28B, LYS33A, LYS33B, LYS81A, MET258B, PHE44A, SER45A, THR203B, VAL199B, VAL32B, VAL47A, VAL74A, VAL78A
• A-E: ALA73A, ARG137E, ARG66A, ARG66E, ARG68A, ASN49A, ASN62A, ASN76A, ASP135E, ASP43A, ASP43E, ASP69A, GLN132A, GLN132E, GLN133E, GLN136E, GLN72A, GLU46A, LEU134E, LEU67A, LEU70A, LYS167E, LYS65A, LYS65E, SER130A, SER130E, SER131A, SER131E, SER45A, VAL50A
• A-G: ALA198A, ALA35A, ALA37G, ALA73G, ASN196A, ASN26A, ASN75G, ASN76G, ASP194A, ASP197A, ASP204A, ASP260A, ASP34G, ASP43G, GLN200A, GLN30A, GLN36A, GLN36G, GLN72G, GLU46G, GLU79G, GLY261A, GLY41G, HIS40A, HIS40G, ILE27A, LEU184A, LEU195A, LEU259A, LEU29A, LEU38G, LEU39A, LEU39G, LEU42G, LEU77G, LYS189G, LYS28A, LYS33A, LYS33G, LYS81G, MET258A, PHE44G, SER25A, SER45G, THR203A, VAL199A, VAL32A, VAL74G, VAL78G
• A-I: ALA103A, ALA104A, ALA139I, ARG137I, ARG138I, ARG162I, ARG52I, ARG55I, ARG58I, ARG59I, ARG66I, ARG90A, ASN142I, ASN49I, ASN62I, ASP105A, ASP135I, ASP295A, ASP337A, ASP60I, ASP63I, ASP97A, ASP98A, GLN132I, GLN133I, GLN136I, GLN192I, GLN51I, GLN85A, GLU107A, GLU339A, GLU46I, GLU57I, ILE101A, ILE144I, ILE88A, LEU100A, LEU102A, LEU106A, LEU134I, LEU140I, LEU141I, LEU338A, LEU53I, LEU89A, LEU99A, LYS108A, LYS56I, LYS86A, MET143I, MET54I, SER111A, SER131I, SER340A, SER45I, SER48I, SER87A, SER96A, VAL335A, VAL336A, VAL50I, VAL91A
• A-K: ALA139A, ALA211K, ARG137A, ARG138A, ARG17K, ARG18K, ARG221K, ARG58A, ASN128A, ASN142A, ASN215K, ASN263K, ASN26K, ASP135A, ASP204K, ASP218K, ASP260K, CYS24K, GLN132A, GLN133A, GLN136A, GLN14K, GLN200K, GLN224K, GLY127A, GLY206K, GLY22K, GLY261K, GLY262K, HIS226K, ILE208K, LEU129A, LEU134A, LEU140A, LEU141A, LEU205K, LEU207K, LEU219K, LEU222K, LEU259K, LYS212K, LYS28K, MET126A, MET143A, MET258K, MET264K, PRO214K, SER130A, SER131A, SER217K, SER21K, SER225K, SER25K, THR203K, THR210K, THR223K, TYR209K
• B-E: ALA139E, ALA201B, ALA211B, ARG137E, ARG138E, ARG17B, ARG18B, ARG221B, ASN142E, ASN263B, ASN26B, ASP135E, ASP204B, ASP218B, ASP260B, CYS24B, GLN133E, GLN136E, GLN14B, GLN200B, GLN224B, GLY145E, GLY206B, GLY22B, GLY261B, GLY262B, HIS226B, ILE144E, ILE208B, LEU129E, LEU134E, LEU140E, LEU141E, LEU205B, LEU207B, LEU219B, LEU222B, LEU259B, LYS212B, LYS28B, MET258B, MET264B, PHE10B, SER130E, SER131E, SER217B, SER21B, SER225B, THR203B, THR210B, TYR209B
• B-G: ALA35G, ALA37B, ALA73B, ASN196G, ASN26G, ASN75B, ASN76B, ASP194G, ASP197G, ASP204G, ASP260G, ASP34B, ASP43B, GLN200G, GLN30G, GLN36B, GLN36G, GLN72B, GLU46B, GLU79B, GLY261G, GLY41B, HIS226G, HIS40B, HIS40G, ILE27G, LEU184G, LEU195G, LEU259G, LEU29G, LEU38B, LEU39B, LEU39G, LEU42B, LEU77B, LYS189B, LYS28G, LYS33B, LYS33G, LYS81B, MET258G, PHE44B, SER45B, THR203G, VAL199G, VAL32G, VAL74B, VAL78B
• E-K: ALA198K, ALA35K, ALA37E, ALA37K, ALA73E, ASN196K, ASN26K, ASN71E, ASN75E, ASN76E, ASP194K, ASP197K, ASP260K, ASP34E, ASP34K, ASP43E, ASP69E, GLN200K, GLN30K, GLN36E, GLN36K, GLN72E, GLU46E, GLU79E, GLY41E, HIS40E, HIS40K, LEU195K, LEU29K, LEU38E, LEU39E, LEU39K, LEU42E, LEU70E, LEU77E, LYS189E, LYS28K, LYS33E, LYS33K, LYS65E, LYS81E, PHE44E, SER45E, THR188K, VAL193K, VAL199K, VAL32K, VAL47E, VAL74E, VAL78E
• I-K: LYS287K, SER225I