3T1H
structure of the thermus thermophilus 30s ribosomal subunit complexed with a human anti-codon stem loop (hasl) of transfer rna lysine 3 (trnalys3) bound to an mrna with an aaa-codon in the a-site and paromomycin
Total interactions analyzed 253
Total true interactions 26
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -5.9397
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -12.3547 -12.3547 11 0 0 471 1 3 5
B-E 0.0 0.0 -0.012 -0.012 5 0 0 12 0 1 2
B-H -28.8298 -32.0558 -58.2153 -119.1009 33 10 0 2842 0 17 17
C-D 0.0 0.8872 -0.349 0.5382 5 0 0 65 0 0 6
C-E -3.0335 -21.6524 -7.7973 -32.4832 17 0 0 622 1 4 5
C-J 0.0 4.9534 -95.9518 -90.9984 58 2 2 3527 0 14 21
C-N -21.9476 10.7297 -228.685 -239.9029 79 19 4 9692 0 19 39
D-E -5.5247 -43.7075 -34.1854 -83.4176 39 2 0 1855 2 6 9
E-H -35.9775 -59.4099 -140.821 -236.2084 65 23 2 6576 3 40 40
F-O 0.0 0.0 -0.9243 -0.9243 4 0 0 142 0 2 2
F-R -54.4255 -31.3849 -268.282 -354.0923 87 28 8 10534 3 14 24
G-I 0.0 3.3087 -39.6974 -36.3887 36 1 4 2209 0 6 9
G-K 0.0 0.0 -56.2905 -56.2905 27 0 3 2212 0 3 7
G-V 0.0 0.0 -0.0442 -0.0442 2 0 0 18 0 1 0
H-L 0.0 0.0 -9.9172 -9.9172 10 2 0 487 0 0 1
H-Q 0.0 3.5692 -25.1664 -21.5972 15 3 0 1232 0 2 8
I-J 0.0 0.0 -34.5104 -34.5104 20 1 0 1445 0 9 17
I-M 0.0 0.9275 -4.4145 -3.487 3 0 0 291 0 0 3
I-N 0.0 0.0 -17.5713 -17.5713 8 1 0 563 0 0 0
J-N -62.2813 -56.384 -202.076 -320.7413 54 28 7 8582 5 12 35
K-R -18.0382 -6.1688 -79.1699 -103.3769 38 8 2 3491 3 15 19
L-Q 0.0 0.0 -55.6367 -55.6367 22 3 4 2388 0 0 8
M-S -2.0987 39.9222 -76.6482 -38.8247 44 11 0 4055 0 8 21
M-V 0.0 0.0 -1.2437 -1.2437 11 0 0 247 0 3 9
O-Q 0.0 -1.0834 -0.15 -1.2334 8 0 0 68 0 7 6
S-V 0.0 0.0 -0.0337 -0.0337 2 0 0 19 0 0 0