3SE9

crystal structure of broadly and potently neutralizing antibody vrc- pg04 in complex with hiv-1 gp120

• Total interactions analyzed: 3
• Total true interactions: 3
• Strongest Interaction:
  • Chains: H-L
  • Int. Res.: 188
  • Norm. En. per Res.: -2.7832
• Hub Node: G(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
G-H	-36.112	-32.4866	-182.364	-250.9625	104	6	2	7177	7	14	14
G-L	0.0	0.0	-30.0239	-30.0239	29	0	0	1368	0	4	4
H-L	-36.2698	-29.9694	-457.004	-523.2433	188	12	12	18699	2	28	19

Interface residues

• G-H: ALA281G, ALA460G, ALA55H, ARG456G, ARG469G, ARG480G, ARG64H, ARG71H, ARG73H, ASN276G, ASN279G, ASN280G, ASN425G, ASN461G, ASN465G, ASN474G, ASN57H, ASN94G, ASP368G, ASP457G, ASP477G, ASP62H, ASP74H, GLN100H, GLN362G, GLN428G, GLN432G, GLN65H, GLN95H, GLU102G, GLU26H, GLU275G, GLU33H, GLU370G, GLY100H, GLY124G, GLY198G, GLY366G, GLY367G, GLY429G, GLY431G, GLY458G, GLY459G, GLY471G, GLY472G, GLY473G, GLY49H, GLY54H, GLY59H, HIS35H, ILE284G, ILE371G, ILE475G, ILE48H, LEU122G, LEU34H, LEU369G, LEU454G, LEU69H, LEU75H, LYS282G, LYS476G, LYS52H, LYS96H, LYS97G, MET426G, PHE100H, PHE468G, PHE58H, PHE63H, PHE76H, PHE97H, PRO363G, PRO364G, PRO470G, PRO61H, SER199G, SER365G, SER60H, SER68H, THR123G, THR257G, THR278G, THR283G, THR372G, THR430G, THR455G, THR463G, THR467G, THR52H, THR53H, THR70H, THR99H, TRP100H, TRP427G, TRP47H, TRP50H, TRP96G, TYR100H, TYR98H, VAL51H, VAL52H, VAL56H, VAL67H
• G-L: ALA26L, ALA281G, ALA460G, ARG456G, ASN276G, ASN279G, ASN280G, ASN461G, ASN462G, ASP457G, GLN90L, GLU1L, GLU96L, GLY31L, GLY458G, GLY459G, HIS32L, ILE2L, LEU277G, LEU4L, LEU91L, LYS282G, LYS53L, LYS97G, PHE97L, SER27L, THR278G, TYR30L, VAL3L
• H-L: ALA125H, ALA130L, ALA136H, ALA137H, ALA168H, ALA50L, ALA55L, ALA93H, ARG105H, ARG38H, ARG85L, ARG94H, ASN137L, ASN138L, ASN57H, ASP101H, ASP122L, ASP144H, ASP167L, ASP170L, CYS134L, CYS140H, CYS214L, CYS88L, CYS92H, GLN100H, GLN100L, GLN124L, GLN160L, GLN166L, GLN171H, GLN1H, GLN37L, GLN39H, GLN3H, GLN42L, GLN43H, GLN6H, GLN89L, GLN90L, GLN95H, GLU123L, GLU161L, GLU165L, GLU213L, GLU46H, GLU96L, GLY100H, GLY101L, GLY104H, GLY106H, GLY133H, GLY134H, GLY139H, GLY157L, GLY162H, GLY212L, GLY31L, GLY41L, GLY42H, GLY44H, GLY49H, GLY57L, GLY59H, GLY99L, HIS164H, HIS32L, HIS35H, ILE117L, ILE48H, ILE48L, ILE58L, LEU102H, LEU124H, LEU125L, LEU135L, LEU136L, LEU138H, LEU141H, LEU170H, LEU175H, LEU175L, LEU178H, LEU179L, LEU181L, LEU189H, LEU45H, LEU46L, LEU47L, LEU4H, LEU91L, LYS126L, LYS129H, LYS143H, LYS169L, LYS207L, LYS209H, LYS214H, LYS38L, LYS39L, LYS45L, LYS53L, LYS96H, MET33L, PHE100H, PHE116L, PHE118L, PHE122H, PHE139L, PHE166H, PHE209L, PHE49L, PHE58H, PHE91H, PHE97L, PHE98L, PRO119L, PRO120L, PRO123H, PRO126H, PRO167H, PRO40L, PRO43L, PRO44L, SER114L, SER120H, SER121L, SER127H, SER127L, SER128H, SER131L, SER132H, SER159L, SER161H, SER162L, SER168L, SER172H, SER173H, SER174L, SER176L, SER177H, SER177L, SER179H, SER180H, SER186H, SER208L, SER215H, SER52L, SER56L, THR129L, THR135H, THR160H, THR164L, THR165H, THR172L, THR178L, THR180L, THR183H, THR34L, THR51L, THR89H, THR99H, TRP100H, TRP103H, TRP35L, TRP36H, TRP47H, TRP50H, TYR100H, TYR173L, TYR176H, TYR36L, TYR86L, TYR87L, VAL115L, VAL121H, VAL132L, VAL133L, VAL142H, VAL163H, VAL163L, VAL169H, VAL181H, VAL182H, VAL184H, VAL211H, VAL2H, VAL37H