3SB2

crystal structure of the rna chaperone hfq from herbaspirillum seropedicae smr1

• Total interactions analyzed: 15
• Total true interactions: 7
• Strongest Interaction:
  • Chains: B-C
  • Int. Res.: 72
  • Norm. En. per Res.: -3.8618
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-51.8907	3.571	-202.876	-251.1957	70	12	7	8885	0	1	6
A-F	-59.0689	10.6903	-206.413	-254.7916	70	12	8	8958	0	2	6
B-C	-50.676	3.0132	-230.387	-278.0498	72	13	8	9796	0	1	6
C-D	-33.0135	8.308	-182.704	-207.4095	67	17	6	7812	0	1	5
C-E	0.0	0.0	-0.0008	-0.0008	2	0	0	2	0	0	2
D-E	-36.7839	8.0044	-187.011	-215.7905	71	14	9	8202	0	1	6
E-F	-47.5661	2.8559	-200.819	-245.5291	72	8	7	8350	0	1	6

Interface residues

• A-B: ALA59A, ALA59B, ALA66A, ALA68A, ARG48B, ARG67A, ASN29A, ASN29B, ASN49B, ASP10A, ASP41A, ASP41B, GLN42A, GLN42B, GLN53B, GLN6A, GLN9A, GLU38B, GLY30A, GLY30B, HIS58A, HIS58B, ILE25A, ILE25B, ILE31A, ILE31B, ILE60A, ILE60B, LEU13A, LEU16A, LEU27A, LEU27B, LEU33B, LEU46B, LEU47B, LEU71A, LEU7A, LEU8A, LYS57A, LYS57B, MET54B, PHE12A, PHE40A, PHE40B, PRO11A, PRO65A, SER24A, SER39B, SER61A, THR50B, THR52B, THR62A, TYR26A, TYR43A, TYR43B, TYR56A, TYR56B, VAL21A, VAL28A, VAL28B, VAL44A, VAL44B, VAL45A, VAL45B, VAL51B, VAL55A, VAL55B, VAL63A, VAL64A, VAL69A
• A-F: ALA59A, ALA59F, ALA66F, ALA68F, ARG17A, ARG67F, ASN29A, ASN29F, ASN49A, ASP10F, ASP41A, ASP41F, GLN42A, GLN42F, GLN53A, GLN6F, GLN9F, GLU38A, GLY30A, GLY30F, HIS58A, HIS58F, ILE25A, ILE25F, ILE31A, ILE31F, ILE60A, ILE60F, LEU13F, LEU16F, LEU27A, LEU27F, LEU33A, LEU46A, LEU47A, LEU71F, LEU7F, LEU8F, LYS57A, LYS57F, MET54A, PHE12F, PHE40A, PHE40F, PRO11F, PRO65F, SER24F, SER39A, SER61F, THR52A, THR62F, TYR26F, TYR43A, TYR43F, TYR56A, TYR56F, VAL28A, VAL28F, VAL37A, VAL37F, VAL44A, VAL44F, VAL45A, VAL45F, VAL51A, VAL55A, VAL55F, VAL63F, VAL64F, VAL69F
• B-C: ALA59B, ALA59C, ALA66B, ALA68B, ARG17C, ARG48C, ARG67B, ASN14B, ASN29B, ASN29C, ASN49C, ASN70B, ASP10B, ASP41B, ASP41C, GLN42B, GLN42C, GLN53C, GLN6B, GLN9B, GLU38C, GLY30B, GLY30C, HIS58B, HIS58C, ILE25B, ILE25C, ILE31B, ILE31C, ILE60B, ILE60C, LEU13B, LEU16B, LEU27B, LEU27C, LEU33C, LEU46C, LEU47C, LEU7B, LEU8B, LYS32B, LYS57B, LYS57C, MET54C, PHE12B, PHE40B, PHE40C, PRO11B, PRO65B, SER24B, SER39C, SER61B, THR50C, THR52C, THR62B, TYR26B, TYR43B, TYR43C, TYR56B, TYR56C, VAL21B, VAL28B, VAL28C, VAL44B, VAL44C, VAL45B, VAL45C, VAL51C, VAL55C, VAL63B, VAL64B, VAL69B
• C-D: ALA59C, ALA59D, ALA66C, ARG17D, ARG67C, ASN14C, ASN29C, ASN29D, ASN49D, ASP10C, ASP41C, ASP41D, GLN42C, GLN42D, GLN53D, GLN9C, GLU38D, GLY30C, GLY30D, HIS58C, HIS58D, ILE25C, ILE25D, ILE31C, ILE31D, ILE60C, ILE60D, LEU13C, LEU16C, LEU27C, LEU27D, LEU33D, LEU46D, LEU47D, LEU7C, LEU8C, LYS57C, LYS57D, MET54D, PHE12C, PHE40C, PHE40D, PRO11C, PRO65C, SER24C, SER39D, SER61C, THR50D, THR52D, THR62C, TYR26C, TYR43C, TYR43D, TYR56C, TYR56D, VAL23C, VAL28C, VAL28D, VAL37C, VAL44C, VAL44D, VAL45C, VAL45D, VAL51D, VAL55D, VAL63C, VAL64C
• C-E: VAL28C, VAL28E
• D-E: ALA59D, ALA59E, ALA66D, ALA68D, ARG48E, ARG67D, ASN14D, ASN29D, ASN29E, ASN49E, ASN70D, ASP10D, ASP41D, ASP41E, GLN42D, GLN42E, GLN53E, GLN6D, GLN9D, GLU38E, GLY30D, GLY30E, HIS58D, HIS58E, ILE25D, ILE25E, ILE31D, ILE31E, ILE60D, ILE60E, LEU13D, LEU16D, LEU27D, LEU27E, LEU33E, LEU46E, LEU47E, LEU7D, LEU8D, LYS57D, LYS57E, MET54E, PHE12D, PHE40D, PHE40E, PRO11D, PRO65D, SER24D, SER39E, SER61D, THR50E, THR52E, THR62D, TYR26D, TYR43D, TYR43E, TYR56D, TYR56E, VAL21D, VAL23D, VAL28D, VAL28E, VAL44D, VAL44E, VAL45D, VAL45E, VAL51E, VAL55E, VAL63D, VAL64D, VAL69D
• E-F: ALA59E, ALA59F, ALA66E, ALA68E, ARG17F, ARG48F, ARG67E, ASN14E, ASN29E, ASN29F, ASN49F, ASP10E, ASP41E, ASP41F, GLN42E, GLN42F, GLN53F, GLN9E, GLU38F, GLY30E, GLY30F, HIS58E, HIS58F, ILE25E, ILE25F, ILE31E, ILE31F, ILE60E, ILE60F, LEU13E, LEU16E, LEU27E, LEU27F, LEU33F, LEU46F, LEU47F, LEU71E, LEU7E, LEU8E, LYS57E, LYS57F, MET54F, PHE12E, PHE40E, PHE40F, PRO11E, PRO65E, SER24E, SER39F, SER61E, THR50F, THR52F, THR62E, TYR26E, TYR43E, TYR43F, TYR56E, TYR56F, VAL23E, VAL28E, VAL28F, VAL37E, VAL44E, VAL44F, VAL45E, VAL45F, VAL51F, VAL55E, VAL55F, VAL63E, VAL64E, VAL69E