3S15
rna polymerase ii initiation complex with a 7-nt rna
Total interactions analyzed 66
Total true interactions 23
Strongest Interaction Chains C-L
Int. Res. 58
Norm. En. per Res. -4.9869
Hub Node B(8)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
Download
Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -536.8302 -334.3716 -2835.44 -3706.6418 772 158 59 110035 26 274 244
A-C -19.5421 8.3682 -90.988 -102.1618 56 5 0 3630 0 15 19
A-E -86.5781 -73.014 -615.731 -775.3231 210 37 14 24077 6 80 63
A-F -51.587 -62.2069 -467.066 -580.8599 158 20 16 19085 2 48 43
A-H -83.4304 -24.4883 -422.597 -530.5157 136 38 11 17846 5 36 35
A-I -140.2468 -41.0223 -486.029 -667.2982 145 30 9 17874 4 57 51
A-K -46.0653 -23.9607 -292.696 -362.7219 91 10 8 10590 2 23 21
B-C -81.1708 -95.2959 -541.802 -718.2687 164 28 6 18487 6 55 61
B-E 0.0 0.0 -0.0006 -0.0006 2 0 0 2 0 0 1
B-F 0.0 0.0 -7.1449 -7.1449 16 0 0 344 0 5 7
B-H 0.0 0.0 -0.1922 -0.1922 4 0 0 46 0 0 0
B-I -29.7281 -55.0838 -333.076 -417.8879 137 20 3 13787 3 50 49
B-J -53.7303 -31.9424 -475.095 -560.7677 143 29 7 19153 5 34 38
B-K 0.0 -14.3425 -92.9411 -107.2836 57 8 0 3588 2 17 19
B-L -70.5583 -57.8759 -247.042 -375.4762 111 15 8 10914 5 43 46
C-H 0.0 -3.6306 -27.4966 -31.1272 21 0 1 1218 0 8 6
C-J -28.0567 -49.9038 -277.763 -355.7235 112 20 10 12533 8 39 27
C-K -60.6969 -20.7429 -555.865 -637.3048 153 27 16 23842 7 44 43
C-L -40.8 -74.7514 -173.689 -289.2403 58 10 9 6037 9 25 16
E-F 0.0 -14.2411 -19.6821 -33.9232 22 0 0 1075 0 6 6
H-K 0.0 0.0 -35.6289 -35.6289 23 5 0 1473 2 5 6
J-L -4.2828 0.0 -1.942 -6.2248 9 0 0 107 0 0 1
K-L 0.0 6.0669 -0.804 5.2629 6 0 0 147 0 3 2