3RMD

crystal structure of a replicative dna polymerase bound to dna containing thymine glycol

• Total interactions analyzed: 66
• Total true interactions: 3
• Strongest Interaction:
  • Chains: B-D
  • Int. Res.: 77
  • Norm. En. per Res.: -2.0565
• Hub Node: B(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	1.2507	-7.0956	-5.8448	15	0	1	494	0	13	14
B-C	0.0	16.1123	-67.9943	-51.882	54	5	0	3484	0	34	23
B-D	-8.5871	-8.9397	-140.822	-158.3488	77	5	5	6188	2	36	35

Interface residues

• A-B: ARG449A, ARG449B, ASN675A, ASN675B, ASP452A, ASP452B, ASP466A, ASP466B, LYS465A, LYS465B, SER451B, TYR454A, TYR454B, VAL453A, VAL453B
• B-C: ALA721B, ARG384C, ARG642B, ARG74C, ARG750B, ARG751B, ASN645B, ASN711B, ASP643B, ASP77C, CYS41C, GLN45C, GLN70C, GLN754B, GLN773B, GLU43C, GLU722B, GLU747B, GLU755B, GLU758B, GLU762B, GLU766B, GLU76C, GLU770B, GLY694B, GLY697B, GLY756B, GLY79C, HIS40C, ILE78C, LEU170B, LEU693B, LEU725B, LEU753B, LEU80C, LYS60C, LYS696B, LYS73C, LYS769B, MET75C, PHE767B, PRO42C, PRO691B, PRO692B, PRO723B, SER44C, SER695B, SER759B, THR58C, THR644B, TRP713B, TRP71C, TYR763B, VAL453C
• B-D: ALA655D, ALA887B, ALA895D, ARG403B, ARG403D, ARG656D, ARG658B, ARG658D, ASN402B, ASN606D, ASP634D, ASP649D, ASP652D, ASP890B, ASP890D, ASP899B, ASP902B, CYS609B, CYS609D, GLN761B, GLU607B, GLU607D, GLU612B, GLU638D, GLU657D, GLU757B, GLU757D, GLY610B, GLY610D, GLY637D, HIS646D, ILE400B, ILE632B, ILE632D, ILE633D, ILE698B, LEU605B, LEU605D, LEU651D, LEU889B, LEU889D, LEU897B, LEU897D, LYS405B, LYS631D, LYS635B, LYS635D, LYS640D, LYS653D, LYS888B, LYS888D, LYS893B, LYS894B, LYS894D, MET900B, PHE616D, PHE641D, PHE650B, PHE650D, PHE654B, PHE654D, PHE898B, PHE901B, PRO401B, SER639D, SER885B, SER896B, SER896D, THR611B, THR611D, TRP647D, TYR604B, TYR604D, VAL608B, VAL608D, VAL636B, VAL636D