3RER

crystal structure of e. coli hfq in complex with au6a rna and adp

• Total interactions analyzed: 21
• Total true interactions: 6
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 72
  • Norm. En. per Res.: -4.6679
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-69.5057	8.0302	-191.737	-253.2126	67	7	8	7818	0	1	5
A-F	-54.8078	6.9015	-208.586	-256.4923	65	13	7	8339	0	1	5
B-C	-68.0589	3.5625	-204.385	-268.8814	70	8	6	7988	0	1	5
C-D	-97.137	11.1067	-250.056	-336.0863	72	13	8	9379	0	3	7
D-E	-84.7142	10.2492	-211.709	-286.1741	64	11	9	8253	0	1	5
E-F	-57.6902	9.775	-184.597	-232.5122	64	5	8	7425	0	1	5

Interface residues

• A-B: ALA58A, ALA58B, ARG16B, ASN13A, ASN28A, ASN28B, ASN48B, ASP40A, ASP40B, ASP9A, GLN41A, GLN41B, GLN52B, GLN8A, GLU37B, GLY29A, GLY29B, HIS57A, HIS57B, ILE24A, ILE24B, ILE30A, ILE30B, ILE36A, ILE44A, ILE44B, ILE59A, ILE59B, LEU12A, LEU15A, LEU26A, LEU26B, LEU32B, LEU45B, LEU46B, LEU7A, LYS47B, LYS56A, LYS56B, MET53B, PHE11A, PHE39A, PHE39B, PHE42A, PHE42B, PRO10A, PRO64A, SER23A, SER38B, SER51B, SER60A, SER65A, SER6A, THR49B, THR61A, TYR25A, TYR55A, TYR55B, VAL27A, VAL27B, VAL43A, VAL43B, VAL50B, VAL54A, VAL54B, VAL62A, VAL63A
• A-F: ALA58A, ALA58F, ARG16A, ASN28A, ASN28F, ASN48A, ASP40A, ASP40F, ASP9F, GLN41A, GLN41F, GLN52A, GLN5F, GLN8F, GLU37A, GLY29A, GLY29F, HIS57A, HIS57F, ILE24A, ILE24F, ILE30A, ILE30F, ILE36A, ILE36F, ILE44A, ILE44F, ILE59A, ILE59F, LEU12F, LEU15F, LEU26A, LEU26F, LEU32A, LEU45A, LEU46A, LEU7F, LYS56A, LYS56F, MET53A, PHE11F, PHE39A, PHE39F, PHE42A, PHE42F, PRO10F, PRO64F, SER23F, SER38A, SER51A, SER60F, SER65F, SER6F, THR61F, TYR25F, TYR55A, TYR55F, VAL27A, VAL27F, VAL43A, VAL43F, VAL50A, VAL54A, VAL62F, VAL63F
• B-C: ALA58B, ALA58C, ARG16C, ASN13B, ASN13C, ASN28B, ASN28C, ASN48C, ASP40B, ASP40C, ASP9B, GLN41B, GLN41C, GLN52C, GLN5B, GLN8B, GLU37C, GLY29B, GLY29C, GLY4B, HIS57B, HIS57C, ILE24B, ILE24C, ILE30B, ILE30C, ILE36B, ILE36C, ILE44B, ILE44C, ILE59B, ILE59C, LEU12B, LEU15B, LEU26B, LEU26C, LEU32C, LEU45C, LEU46C, LEU7B, LYS47C, LYS56B, LYS56C, MET53C, PHE11B, PHE39B, PHE39C, PHE42B, PHE42C, PRO10B, PRO64B, SER23B, SER38C, SER51C, SER60B, SER65B, SER6B, THR49C, THR61B, TYR25B, TYR55B, TYR55C, VAL27B, VAL27C, VAL43B, VAL43C, VAL50C, VAL54C, VAL62B, VAL63B
• C-D: ALA2C, ALA58C, ALA58D, ARG16D, ASN13D, ASN28C, ASN28D, ASN48D, ASP40C, ASP40D, ASP9C, ASP9D, GLN41C, GLN41D, GLN52D, GLN5C, GLN8C, GLU37D, GLY29C, GLY29D, GLY4C, HIS57C, HIS57D, ILE24C, ILE30C, ILE30D, ILE36C, ILE36D, ILE44C, ILE44D, ILE59C, ILE59D, LEU12C, LEU12D, LEU15C, LEU26C, LEU26D, LEU32D, LEU45D, LEU46D, LEU7C, LYS3C, LYS47D, LYS56C, LYS56D, MET53D, PHE11C, PHE39C, PHE39D, PHE42C, PHE42D, PRO10C, PRO64C, SER23C, SER38D, SER51D, SER60C, SER65C, SER6C, THR49D, THR61C, TYR25C, TYR55C, TYR55D, VAL27C, VAL27D, VAL43C, VAL43D, VAL50D, VAL54D, VAL62C, VAL63C
• D-E: ALA58D, ALA58E, ARG16E, ASN28D, ASN28E, ASN48E, ASP40D, ASP40E, ASP9D, GLN41D, GLN41E, GLN52E, GLN8D, GLU37E, GLY29D, GLY29E, HIS57D, HIS57E, ILE24D, ILE24E, ILE30D, ILE30E, ILE36D, ILE36E, ILE44D, ILE44E, ILE59D, ILE59E, LEU12D, LEU15D, LEU26D, LEU26E, LEU32E, LEU45E, LEU46E, LEU7D, LYS56D, LYS56E, MET53E, PHE11D, PHE39D, PHE39E, PHE42D, PHE42E, PRO10D, PRO64D, SER23D, SER38E, SER51E, SER60D, SER65D, SER6D, THR61D, TYR25D, TYR55D, TYR55E, VAL27D, VAL27E, VAL43D, VAL43E, VAL50E, VAL54E, VAL62D, VAL63D
• E-F: ALA58E, ALA58F, ASN13E, ASN28E, ASN28F, ASN48F, ASP40E, ASP40F, ASP9E, GLN41E, GLN41F, GLN52F, GLN8E, GLY29E, GLY29F, HIS57E, HIS57F, ILE24E, ILE24F, ILE30E, ILE30F, ILE36E, ILE44E, ILE44F, ILE59E, ILE59F, LEU12E, LEU15E, LEU26E, LEU26F, LEU32F, LEU45F, LEU46F, LEU7E, LYS47F, LYS56E, LYS56F, MET53F, PHE11E, PHE39E, PHE39F, PHE42E, PHE42F, PRO10E, PRO64E, SER23E, SER38F, SER51F, SER60E, SER65E, SER6E, THR49F, THR61E, TYR25E, TYR55E, TYR55F, VAL27E, VAL27F, VAL43E, VAL43F, VAL50F, VAL54F, VAL62E, VAL63E