3R93

crystal structure of the chromo domain of m-phase phosphoprotein 8 bound to h3k9me3 peptide

• Total interactions analyzed: 28
• Total true interactions: 14
• Strongest Interaction:
  • Chains: D-H
  • Int. Res.: 41
  • Norm. En. per Res.: -5.581
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-2.1462	-2.1462	7	0	0	147	0	3	2
A-C	-41.2645	-13.705	-146.947	-201.9164	50	9	2	5309	3	31	36
A-D	0.0	0.0	-0.905	-0.905	13	0	0	166	0	10	15
A-E	-54.0308	0.0	-137.818	-191.8488	39	9	5	4461	0	16	9
A-H	-38.8035	0.0	-62.5163	-101.3198	30	4	0	2390	0	8	6
B-C	0.0	9.8102	-11.6893	-1.8792	23	0	0	792	0	22	17
B-D	0.0	0.0	-1.1775	-1.1775	6	0	0	78	0	7	11
B-F	-66.152	-18.2833	-147.156	-231.5913	43	7	5	5053	0	22	13
C-G	-54.5886	2.3963	-142.994	-195.1863	41	7	5	4680	0	17	10
D-E	-37.1882	0.0	-65.0505	-102.2387	30	4	0	2325	0	10	6
D-F	0.0	-4.7698	-37.0962	-41.8659	18	0	0	1459	0	12	4
D-H	-60.3919	-11.5796	-156.849	-228.8205	41	6	5	4852	0	18	10
E-H	0.0	0.0	-19.5386	-19.5386	12	0	0	855	0	0	4
F-H	0.0	0.0	-0.0369	-0.0369	4	0	0	16	0	0	3

Interface residues

• A-B: GLU62B, GLU70A, GLY71A, GLY72A, GLY82B, LYS73A, LYS81B
• A-C: ALA111A, ALA111C, ARG107A, ARG107C, ASN113A, ASN113C, ASP66A, ASP66C, GLU112A, GLU112C, GLU70A, GLU70C, GLU93A, GLU93C, GLY71A, GLY71C, GLY72A, GLY72C, ILE110A, ILE110C, ILE64A, ILE64C, ILE94C, LEU103A, LEU65A, LEU65C, LEU75A, LEU75C, LYS109A, LYS109C, LYS114A, LYS114C, LYS68A, LYS68C, LYS73A, LYS73C, LYS77A, LYS77C, MET67A, MET67C, PHE106A, PHE106C, THR69A, THR69C, TRP90A, TRP90C, TYR76A, TYR76C, VAL74A, VAL74C
• A-D: ASP57A, ASP57D, GLU56D, HIS95A, HIS95D, ILE94A, ILE94D, LYS73A, LYS73D, PHE59A, PHE59D, PRO92A, PRO92D
• A-E: ALA7E, ARG8E, ASP57A, ASP87A, ASP98A, CYS99A, GLN5E, GLU101A, GLU105A, GLU60A, GLU62A, GLU70A, GLU91A, GLU97A, GLY12E, HIS95A, ILE64A, ILE94A, LEU103A, LEU104A, LEU75A, LEU96A, LYS100A, LYS14E, LYS4E, LYS63A, LYS81A, PHE59A, PRO92A, SER10E, THR11E, THR6E, THR89A, TRP80A, TRP90A, VAL102A, VAL58A, VAL61A, VAL78A
• A-H: ALA15H, ARG8H, ASP66A, ASP86A, ASP87A, ASP88A, GLU70A, GLU91A, GLU93A, GLY12H, GLY13H, GLY71A, HIS95A, ILE94A, LEU65A, LEU75A, LYS14H, LYS68A, LYS73A, LYS77A, PRO92A, SER10H, SER85A, THR11H, THR89A, TRP80A, TRP90A, TYR76A, VAL74A, VAL78A
• B-C: ARG79B, ARG79C, ASN113C, ASP86B, ASP87B, GLU105C, GLU112C, GLU62B, GLU62C, GLY82B, ILE64C, LEU65C, LYS109C, LYS63B, LYS63C, LYS81B, LYS81C, PHE106C, SER85B, THR84B, TRP80B, TYR83B, VAL102C
• B-D: GLU60B, GLY82D, LYS81B, PHE59D, TYR83D, VAL58B
• B-F: ALA7F, ARG2F, ARG8F, ASP57B, ASP87B, ASP88B, ASP98B, CYS99B, GLN5F, GLU101B, GLU105B, GLU60B, GLU62B, GLU70B, GLU91B, GLU97B, GLY12F, GLY71B, HIS95B, ILE64B, ILE94B, LEU103B, LEU104B, LEU75B, LEU96B, LYS100B, LYS14F, LYS4F, LYS63B, LYS81B, PHE59B, PRO92B, SER10F, THR11F, THR3F, THR6F, THR89B, TRP80B, TRP90B, VAL102B, VAL58B, VAL61B, VAL78B
• C-G: ALA7G, ARG8G, ASP57C, ASP87C, ASP98C, CYS99C, GLN5G, GLU101C, GLU105C, GLU60C, GLU62C, GLU70C, GLU91C, GLU97C, GLY12G, GLY71C, HIS95C, ILE64C, ILE94C, LEU103C, LEU104C, LEU75C, LEU96C, LYS100C, LYS14G, LYS4G, LYS63C, LYS68C, LYS81C, PHE59C, PRO92C, SER10G, THR11G, THR6G, THR89C, TRP80C, TRP90C, VAL102C, VAL58C, VAL61C, VAL78C
• D-E: ALA15E, ARG8E, ASP66D, ASP86D, ASP87D, ASP88D, GLU70D, GLU91D, GLU93D, GLY12E, GLY13E, GLY71D, HIS95D, ILE94D, LEU65D, LEU75D, LYS14E, LYS68D, LYS73D, LYS77D, PRO92D, SER10E, SER85D, THR11E, THR89D, TRP80D, TRP90D, TYR76D, VAL74D, VAL78D
• D-F: ARG2F, ASP57D, ASP86D, ASP87D, GLN5F, GLU56D, GLU60D, GLY82D, LYS4F, LYS81D, PHE59D, THR3F, THR6F, THR84D, TRP80D, TYR83D, VAL58D, VAL61D
• D-H: ALA7H, ARG8H, ASP57D, ASP87D, ASP88D, ASP98D, CYS99D, GLN5H, GLU101D, GLU105D, GLU56D, GLU60D, GLU62D, GLU70D, GLU91D, GLU97D, GLY12H, HIS95D, ILE64D, ILE94D, LEU103D, LEU104D, LEU75D, LEU96D, LYS100D, LYS14H, LYS4H, LYS63D, LYS81D, PHE59D, PRO92D, SER10H, THR11H, THR6H, THR89D, TRP80D, TRP90D, VAL102D, VAL58D, VAL61D, VAL78D
• E-H: ARG8E, ARG8H, GLY12E, GLY12H, GLY13E, GLY13H, LYS14E, LYS14H, SER10E, SER10H, THR11E, THR11H
• F-H: ARG2F, LYS4H, THR3F, THR6H