3R8T
structures of the bacterial ribosome in classical and hybrid states of trna binding
Total interactions analyzed 465
Total true interactions 28
Strongest Interaction Chains K-P
Int. Res. 78
Norm. En. per Res. -4.2383
Hub Node D(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
D-J -6.3433 3.5541 -29.1777 -31.9668 14 0 1 1110 0 0 8
D-K -7.8424 -7.7689 -24.1706 -39.7819 17 0 0 914 0 3 6
D-N -6.6368 4.4627 -18.4019 -20.576 17 1 0 962 0 0 9
D-P -5.9644 10.2508 -135.328 -131.0416 61 15 4 6656 2 11 13
E-L -2.172 3.6379 -123.757 -122.2911 48 14 5 6063 0 8 6
E-Q 0.0 0.0 -0.5691 -0.5691 6 0 0 113 0 0 2
E-2 0.0 0.0 -0.0225 -0.0225 4 0 0 22 0 0 0
G-4 -13.4569 0.0 -7.8513 -21.3082 10 1 0 324 0 2 4
H-X 0.0 -17.8207 -46.3116 -64.1323 39 8 0 2411 0 8 14
J-Q -18.0717 -4.0583 -117.473 -139.603 50 8 8 5276 1 6 22
J-R 0.0 0.0 -9.6146 -9.6146 13 0 0 693 0 0 4
K-P -51.4632 -71.8264 -207.294 -330.5837 78 22 3 8144 9 34 33
L-Q 0.0 0.0 -0.0062 -0.0062 9 0 0 12 0 0 2
L-R 0.0 3.2298 -36.1342 -32.9044 23 2 1 1368 0 0 12
L-3 -25.6577 28.6318 -198.931 -195.9569 60 15 4 8390 0 4 31
M-V -3.3554 -7.3705 -80.4399 -91.1657 53 6 4 3729 0 3 12
M-W 0.0 0.0 -0.0775 -0.0775 6 0 0 53 0 0 4
M-4 0.0 0.0 -0.0072 -0.0072 2 0 0 8 0 0 1
N-S 0.0 0.0 -11.0943 -11.0943 10 0 0 328 0 2 2
N-0 -5.8836 4.2053 -66.7328 -68.4111 36 7 5 3540 0 8 20
O-W 0.0 -10.2285 -4.8413 -15.0698 19 0 0 438 1 4 11
Q-R -32.0391 -12.5101 -219.078 -263.6273 95 17 10 10353 2 25 49
Q-0 0.0 17.8507 -13.3582 4.4925 13 1 0 699 0 0 6
S-0 -14.6528 -10.5692 -71.3532 -96.5752 50 9 8 3818 2 11 10
T-Y 0.0 14.7323 -80.1114 -65.3791 46 7 5 4302 0 10 16
T-2 0.0 0.0 -0.1878 -0.1878 9 0 0 82 0 1 4
W-3 0.0 0.0 -0.0211 -0.0211 3 0 0 16 0 2 2
1-3 0.0 1.0869 -23.0764 -21.9895 19 3 0 1039 0 1 8