3R8S
structures of the bacterial ribosome in classical and hybrid states of trna binding
Total interactions analyzed 465
Total true interactions 28
Strongest Interaction Chains K-P
Int. Res. 75
Norm. En. per Res. -4.2522
Hub Node D(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
D-J 0.0 3.0805 -20.5075 -17.427 12 1 1 933 0 0 8
D-K -12.9025 -8.2022 -30.636 -51.7407 19 2 0 1062 0 4 6
D-N -4.0836 4.5176 -17.7498 -17.3158 16 0 0 999 0 0 12
D-P -15.4605 6.0004 -147.508 -156.9681 63 12 5 6751 4 15 13
E-L -3.2642 0.0 -111.898 -115.1622 48 6 5 5717 0 7 7
E-Q 0.0 0.0 -0.1601 -0.1601 5 0 0 64 0 0 3
E-2 0.0 0.0 -0.0061 -0.0061 2 0 0 6 0 0 0
G-4 0.0 0.0 -11.042 -11.042 11 0 0 372 0 2 4
H-X -7.5641 -23.4555 -25.5009 -56.5205 32 0 0 1390 2 8 12
J-Q -9.7165 -5.3816 -113.339 -128.4371 54 5 7 5377 2 6 24
J-R 0.0 0.0 -1.4219 -1.4219 10 0 0 237 0 0 4
K-P -53.568 -56.3069 -209.04 -318.915 75 17 3 8282 7 34 35
L-Q 0.0 0.0 -0.0031 -0.0031 9 0 0 8 0 0 2
L-R 0.0 3.7188 -34.2097 -30.4909 22 0 1 1366 0 0 13
L-3 -3.0808 13.3858 -190.576 -180.2711 59 7 5 8412 0 3 32
M-V 0.0 -6.7985 -81.8055 -88.604 54 4 3 3604 0 4 11
M-W 0.0 0.0 -0.3471 -0.3471 7 0 0 125 0 0 4
M-4 0.0 0.0 -0.3896 -0.3896 2 0 0 63 0 0 1
N-S 0.0 0.0 -14.4827 -14.4827 13 0 0 420 0 2 2
N-0 -11.2602 3.5734 -80.9301 -88.6169 37 9 5 3765 0 10 20
O-W 0.0 0.0 -3.2835 -3.2835 19 0 0 381 0 4 10
Q-R -24.3826 -7.8595 -226.169 -258.4111 102 21 11 10877 2 24 51
Q-0 0.0 17.1762 -14.6847 2.4915 13 2 0 686 0 0 5
S-0 -12.8635 -8.5706 -84.6097 -106.0438 50 6 9 4024 2 11 11
T-Y -9.7024 43.4966 -109.75 -75.9558 49 7 5 5002 1 10 16
T-2 0.0 0.0 -0.1273 -0.1273 8 0 0 47 0 1 4
W-3 0.0 0.0 -0.0135 -0.0135 3 0 0 14 0 2 2
1-3 0.0 1.3846 -21.7855 -20.4008 17 1 0 1018 0 1 9