3QT1
rna polymerase ii variant containing a chimeric rpb9-c11 subunit
Total interactions analyzed 66
Total true interactions 30
Strongest Interaction Chains A-B
Int. Res. 766
Norm. En. per Res. -4.2043
Hub Node B(10)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -458.9005 -349.3103 -2412.32 -3220.5308 766 253 63 106140 21 253 226
A-C -12.2335 13.8054 -62.7013 -61.1295 47 2 0 2579 0 18 17
A-D -8.7989 -21.3755 -45.0832 -75.2577 40 3 1 2645 2 13 5
A-E -58.6348 -89.9405 -533.997 -682.5724 194 52 12 23584 8 79 58
A-F -44.84 -33.5541 -506.843 -585.2371 181 37 17 21895 3 63 54
A-G -19.1521 -65.1791 -116.883 -201.2142 62 11 5 5388 3 20 14
A-H -55.7352 -25.4246 -373.361 -454.5209 141 47 12 17063 2 35 36
A-I -41.0531 -19.8718 -199.776 -260.7009 66 20 8 7774 1 31 26
A-K -25.0009 -32.2655 -225.711 -282.9775 87 9 7 9492 2 22 16
B-C -72.4988 -97.1671 -493.613 -663.2789 166 49 6 18371 7 57 59
B-D 0.0 -14.5176 -53.4306 -67.9483 40 4 1 2796 0 18 20
B-E 0.0 0.0 -18.2487 -18.2487 7 1 0 452 0 2 1
B-F -8.1815 -13.3599 -15.3251 -36.8666 24 2 0 657 1 7 8
B-G 0.0 -3.92 -8.8696 -12.7895 24 0 0 884 0 7 4
B-H 0.0 0.0 -2.1148 -2.1148 4 0 0 80 0 0 0
B-I -6.5512 -3.3456 -115.258 -125.1548 56 7 0 5085 0 15 13
B-J -31.4107 -24.815 -384.934 -441.1597 138 58 6 18253 3 36 38
B-K -3.6063 -12.0943 -68.7645 -84.4651 56 10 0 3233 3 16 20
B-L -44.8632 -74.8122 -206.653 -326.3284 110 15 7 10038 10 44 41
C-H 0.0 -6.2111 -27.7177 -33.9288 21 0 1 1278 0 8 7
C-J -43.7465 -34.8139 -217.704 -296.2645 113 33 9 11654 4 34 25
C-K -51.8615 -39.5117 -426.619 -517.9922 155 49 15 21173 7 46 48
C-L -53.848 -25.9015 -152.711 -232.4605 61 19 9 5964 6 25 15
D-F 0.0 0.0 -0.0017 -0.0017 2 0 0 1 0 1 2
D-G -47.1724 -33.823 -539.493 -620.4884 199 47 19 24024 9 54 45
E-F 0.0 -15.9965 -28.449 -44.4455 22 4 0 1379 0 8 3
F-G -5.2612 -4.0099 -75.0686 -84.3397 52 18 1 4658 0 10 12
H-K 0.0 0.0 -32.7763 -32.7763 24 0 0 1788 0 4 5
J-L 0.0 0.0 -9.9757 -9.9757 10 0 0 523 0 1 1
K-L 0.0 7.1316 -0.9413 6.1903 4 0 0 148 0 2 2