3QO6

crystal structure analysis of the plant protease deg1

• Total interactions analyzed: 36
• Total true interactions: 11
• Strongest Interaction:
  • Chains: C-I
  • Int. Res.: 33
  • Norm. En. per Res.: -3.6972
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-48.3663	-8.8333	-242.047	-299.2466	116	25	8	11258	2	17	20
A-C	-45.1298	-12.2411	-261.304	-318.6749	116	20	7	11568	1	16	19
A-D	-22.0845	0.0	-59.1332	-81.2177	45	17	0	4113	0	0	0
A-F	0.0	0.0	-0.0004	-0.0004	2	0	0	1	0	0	0
A-G	-39.6781	0.0	-63.8241	-103.5022	29	3	0	2462	0	0	0
B-C	-36.993	-10.5948	-282.442	-330.0298	121	22	9	11939	2	16	20
B-D	0.0	0.0	-10.4329	-10.4329	14	0	0	509	0	0	0
B-E	-46.7053	0.0	-66.4252	-113.1305	44	14	0	3072	0	0	0
B-H	-21.8457	0.0	-81.2284	-103.0741	33	7	0	3510	0	0	0
C-F	-43.8516	0.0	-49.3237	-93.1753	44	14	0	3551	0	0	0
C-I	-48.7599	0.0	-73.2474	-122.0073	33	8	0	2970	0	0	0

Interface residues

• A-B: ALA120A, ALA120B, ALA144B, ALA225A, ALA235B, ALA275A, ALA275B, ALA276B, ALA306A, ALA306B, ARG123B, ARG255A, ARG256A, ASN238B, ASN278B, ASN281B, ASP117A, ASP117B, ASP143B, ASP226A, ASP243B, ASP274A, ASP274B, ASP288A, GLN115B, GLN126B, GLN231A, GLN272A, GLN349A, GLU118B, GLU257A, GLU348A, GLY222A, GLY230A, GLY237B, GLY241B, GLY249A, GLY249B, GLY253A, GLY291A, GLY305A, GLY305B, GLY309A, GLY309B, GLY311A, GLY351A, HIS244B, ILE236B, ILE251A, ILE258A, ILE277B, ILE294A, ILE300A, ILE300B, LEU114B, LEU119B, LEU124B, LEU150B, LEU227A, LEU228A, LEU242B, LEU246B, LEU254A, LEU287A, LEU293A, LEU350A, LYS112B, LYS113B, LYS232A, LYS232B, PHE125B, PHE145B, PHE234A, PHE234B, PHE240B, PHE312A, PRO111B, PRO220A, PRO239B, PRO279B, PRO303A, PRO303B, SER224A, SER252A, SER289A, SER290A, SER302A, SER302B, SER304A, SER304B, SER307A, SER307B, SER308A, SER308B, THR116A, THR116B, THR121B, THR129B, THR146B, THR245B, THR247B, THR248B, THR273A, THR292A, TYR134B, TYR301A, VAL122B, VAL152B, VAL221A, VAL223A, VAL229A, VAL233A, VAL250A, VAL270A, VAL310A, VAL316A
• A-C: ALA120A, ALA120C, ALA144A, ALA235A, ALA275A, ALA275C, ALA276A, ALA306A, ALA306C, ARG123A, ARG255C, ARG256C, ASN238A, ASN278A, ASN281A, ASP117A, ASP117C, ASP143A, ASP226C, ASP243A, ASP274A, ASP274C, ASP288C, GLN115A, GLN126A, GLN231C, GLN272C, GLN349C, GLU118A, GLU257C, GLU348C, GLY222C, GLY230C, GLY237A, GLY241A, GLY249A, GLY249C, GLY253C, GLY291C, GLY305A, GLY305C, GLY309A, GLY309C, GLY311C, GLY351C, HIS244A, ILE236A, ILE251C, ILE258C, ILE277A, ILE294C, ILE300A, ILE300C, LEU114A, LEU119A, LEU124A, LEU227C, LEU228C, LEU242A, LEU246A, LEU254C, LEU293C, LEU350C, LYS112A, LYS113A, LYS232A, LYS232C, PHE125A, PHE145A, PHE234A, PHE234C, PHE240A, PHE312C, PRO111A, PRO220C, PRO239A, PRO279A, PRO303A, PRO303C, SER224C, SER252C, SER289C, SER290C, SER302A, SER302C, SER304A, SER304C, SER307A, SER307C, SER308A, SER308C, SER346C, THR116A, THR116C, THR121A, THR121C, THR129A, THR146A, THR245A, THR247A, THR248A, THR248C, THR273C, THR292C, TYR301C, VAL122A, VAL152A, VAL221C, VAL223C, VAL229C, VAL233C, VAL250C, VAL270C, VAL310C, VAL316C, VAL347C
• A-D: ALA261A, ALA262A, ALA299A, ALA306A, ASN171A, ASN278A, ASN281A, ASN297A, ASP203A, GLY157A, GLY280A, GLY283A, GLY284A, GLY305A, GLY311A, HIS173A, ILE258A, ILE267A, ILE277A, ILE300A, PHE240A, PHE312A, PRO239A, PRO279A, PRO303A, SER156A, SER158A, SER259A, SER260A, SER282A, SER302A, SER304A, SER307A, SER308A, THR298A, TYR301A, UNK0D, UNK1D, UNK2D, UNK3D, UNK4D, UNK5D, UNK6D, VAL174A, VAL310A
• A-F: PHE240A, UNK1F
• A-G: ALA342A, ALA366A, ARG265A, ASN398A, ASP344A, GLU433A, GLY264A, GLY338A, GLY399A, ILE336A, ILE339A, ILE388A, LEU337A, LEU358A, LEU402A, LEU406A, LEU432A, LYS340A, LYS435A, PHE341A, PRO266A, PRO335A, PRO343A, PRO361A, TYR403A, UNK1G, UNK2G, UNK3G, VAL355A
• B-C: ALA120B, ALA120C, ALA144C, ALA225B, ALA235C, ALA275B, ALA275C, ALA276C, ALA306B, ALA306C, ARG123C, ARG255B, ARG256B, ASN238C, ASN278C, ASN281C, ASP117B, ASP117C, ASP143C, ASP226B, ASP243C, ASP274B, ASP274C, ASP288B, ASP317B, GLN115C, GLN126C, GLN142C, GLN188C, GLN231B, GLN272B, GLN349B, GLU118C, GLU257B, GLU348B, GLY222B, GLY230B, GLY237C, GLY241C, GLY249B, GLY249C, GLY253B, GLY291B, GLY305B, GLY305C, GLY309B, GLY309C, GLY311B, GLY351B, HIS244C, ILE236C, ILE251B, ILE258B, ILE277C, ILE294B, ILE300B, ILE300C, LEU114C, LEU119C, LEU124C, LEU150C, LEU227B, LEU228B, LEU242C, LEU246C, LEU254B, LEU293B, LEU350B, LYS112C, LYS113C, LYS232B, LYS232C, PHE125C, PHE145C, PHE234B, PHE234C, PHE240C, PHE312B, PRO111C, PRO220B, PRO239C, PRO279C, PRO303B, PRO303C, SER109C, SER224B, SER252B, SER289B, SER290B, SER302B, SER302C, SER304B, SER304C, SER307B, SER307C, SER308B, SER308C, THR110C, THR116B, THR116C, THR121B, THR121C, THR129C, THR146C, THR245C, THR247C, THR248B, THR248C, THR273B, THR292B, TYR301B, VAL122C, VAL152C, VAL221B, VAL223B, VAL229B, VAL233B, VAL250B, VAL270B, VAL310B, VAL316B
• B-D: ALA306B, ASN278B, GLY241B, GLY280B, GLY305B, PHE240B, PRO239B, PRO279B, SER156B, SER304B, SER307B, UNK0D, UNK1D, UNK2D
• B-E: ALA261B, ALA262B, ALA299B, ALA306B, ASN171B, ASN238B, ASN278B, ASN281B, ASN297B, ASP203B, GLU257B, GLY157B, GLY264B, GLY280B, GLY283B, GLY284B, GLY305B, GLY311B, HIS173B, ILE258B, ILE267B, ILE277B, ILE300B, PHE240B, PHE312B, PRO239B, PRO279B, PRO303B, SER156B, SER158B, SER259B, SER260B, SER282B, SER302B, SER304B, SER307B, THR298B, TYR301B, UNK1E, UNK2E, UNK3E, UNK4E, VAL174B, VAL310B
• B-H: ALA342B, ALA366B, ARG265B, ASP344B, ASP359B, GLU433B, GLY264B, GLY338B, GLY399B, ILE336B, ILE339B, ILE388B, ILE405B, LEU337B, LEU358B, LEU402B, LEU406B, LEU432B, LYS340B, LYS435B, PHE341B, PRO266B, PRO335B, PRO343B, PRO365B, SER346B, THR263B, TYR403B, UNK1H, UNK2H, UNK3H, UNK4H, VAL355B
• C-F: ALA261C, ALA262C, ALA299C, ALA306C, ASN171C, ASN278C, ASN281C, ASN297C, ASP203C, GLU257C, GLY157C, GLY280C, GLY283C, GLY284C, GLY305C, GLY311C, HIS173C, ILE258C, ILE267C, ILE277C, ILE300C, PHE240C, PHE312C, PRO239C, PRO279C, PRO303C, SER156C, SER158C, SER259C, SER260C, SER282C, SER302C, SER304C, SER307C, THR298C, TYR301C, UNK1F, UNK2F, UNK3F, UNK4F, UNK5F, VAL174C, VAL270C, VAL310C
• C-I: ALA342C, ALA366C, ARG265C, ASP344C, ASP359C, GLY264C, GLY338C, GLY399C, ILE336C, ILE339C, ILE388C, LEU337C, LEU358C, LEU402C, LEU406C, LEU432C, LYS340C, LYS435C, PHE341C, PRO266C, PRO335C, PRO343C, PRO361C, PRO365C, SER346C, THR263C, TYR403C, UNK1I, UNK2I, UNK3I, UNK4I, VAL355C, VAL357C