3QJ1

crystal structure of camel peptidoglycan recognition protein, pgrp-s with a trapped diethylene glycol in the ligand diffusion channel at 3.2 a resolution

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 93
  • Norm. En. per Res.: -3.584
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-27.7403	-123.8043	-181.764	-333.3086	93	10	1	8249	8	18	24
A-C	0.0	-27.4839	-69.3467	-96.8306	39	2	0	2784	2	18	17
A-D	0.0	0.0	-8.9376	-8.9376	16	1	0	524	0	1	1
B-D	0.0	-7.5956	-5.3467	-12.9423	16	0	0	346	0	10	3
C-D	-13.9147	0.0	-123.737	-137.6517	82	6	4	5243	0	4	7

Interface residues

• A-B: ALA120A, ALA120B, ALA123A, ALA123B, ALA124A, ALA124B, ALA129A, ALA129B, ALA133A, ALA133B, ALA47A, ALA47B, ALA50A, ALA50B, ALA5A, ALA5B, ARG119A, ARG119B, ARG122A, ARG122B, ASN126A, ASN126B, ASP2B, ASP44A, ASP44B, ASP78A, ASP78B, CYS130A, CYS130B, CYS43A, CYS43B, CYS49A, CYS49B, CYS6A, CYS6B, GLN125A, GLN125B, GLU14A, GLU14B, GLU1B, GLU77A, GLU77B, GLY76A, GLY76B, GLY79A, GLY79B, GLY7A, GLY7B, HIS168A, HIS168B, ILE9A, ILE9B, LEU121A, LEU121B, LEU127A, LEU127B, LEU128A, LEU128B, LEU80A, LEU80B, PRO117A, PRO117B, PRO118A, PRO118B, PRO11A, PRO11B, PRO3B, PRO46A, PRO46B, PRO4A, PRO4B, SER167A, SER48A, SER48B, SER8A, SER8B, THR165A, THR45A, THR45B, TRP15A, TRP15B, TRP166A, TYR141A, TYR141B, TYR82A, TYR82B, VAL10A, VAL10B, VAL132A, VAL132B, VAL143A, VAL81A, VAL81B
• A-C: ALA171A, ALA19C, ARG138A, ARG170A, ARG23C, ARG25C, ARG31A, ARG62C, ARG85C, ASN140A, ASN63C, ASP148A, ASP68C, CYS22C, CYS67C, GLU142A, GLU21C, GLU24C, GLY65C, HIS60C, ILE101A, LEU64C, LYS144A, LYS90C, PRO100A, PRO29A, PRO96A, PRO96C, SER102A, SER139A, SER20C, THR27A, THR97A, TRP66C, TRP98A, TYR32A, VAL149A, VAL30A, VAL61C
• A-D: ARG170A, ASN140A, ASN99D, GLU142A, GLY95D, HIS168A, ILE101D, PRO100D, PRO96D, SER139A, SER167A, THR97D, TRP98D, TYR141A, TYR32D, VAL132A
• B-D: ALA133B, ARG138D, ARG25D, ARG28B, ARG28D, ARG31D, ASN140D, ASP2B, GLU1B, GLY135B, ILE101D, LEU134B, LEU26D, PRO3B, SER139D, THR27D
• C-D: ALA171C, ALA171D, ALA39C, ALA39D, ALA92C, ALA92D, ALA94C, ALA94D, ARG147C, ARG147D, ARG85C, ASN110C, ASN110D, ASN63C, ASN63D, ASN99C, ASN99D, ASP148C, ASP148D, GLN150C, GLN150D, GLY109C, GLY145C, GLY145D, GLY40C, GLY40D, GLY65C, GLY65D, GLY70C, GLY70D, GLY95C, GLY95D, HIS146C, HIS146D, HIS37C, HIS37D, HIS60C, HIS60D, HIS93C, HIS93D, LEU153C, LEU153D, LEU64C, LEU64D, LYS144C, LYS90C, LYS90D, MET112C, MET112D, PRO100C, PRO151C, PRO151D, PRO96C, PRO96D, SER106D, SER154C, SER154D, SER36C, SER41C, SER41D, THR152C, THR152D, THR38C, THR38D, THR97C, THR97D, TRP66C, TRP66D, TRP98C, TRP98D, TYR160C, TYR160D, TYR59C, TYR59D, TYR71C, TYR71D, VAL149C, VAL149D, VAL56C, VAL56D, VAL69C, VAL69D