3Q6F
crystal structure of fab of human mab 2909 specific for quaternary neutralizing epitope of hiv-1 gp120
Total interactions analyzed 66
Total true interactions 29
Strongest Interaction Chains H-J
Int. Res. 54
Norm. En. per Res. -3.4797
Hub Node C(8)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -7.2758 -38.4005 246.113 200.4367 189 19 11 18912 4 28 25
A-D -12.7544 -9.5619 -69.4406 -91.7569 38 5 0 2725 0 15 8
A-G 0.0 0.0 -12.8375 -12.8375 36 0 0 900 0 6 3
A-H 0.0 0.0 -2.6374 -2.6374 14 0 0 273 0 1 1
B-G 0.0 0.0 -1.1059 -1.1059 10 0 0 218 0 0 0
B-H 0.0 0.0 -0.001 -0.001 2 0 0 3 0 0 0
C-D -6.2107 -35.5879 251.205 209.4064 185 18 12 18651 4 29 27
C-E 0.0 0.0 -0.1215 -0.1215 2 0 0 20 0 1 0
C-F 0.0 0.0 -3.3708 -3.3708 9 0 0 196 0 0 0
C-G 0.0 1.714 -4.0902 -2.3762 13 0 0 318 0 5 3
C-I 0.0 1.2845 -42.3465 -41.062 46 3 0 2363 0 6 5
C-J 0.0 -4.963 -5.6504 -10.6134 13 0 0 341 0 1 1
C-K 0.0 0.0 -0.0093 -0.0093 6 0 0 9 0 0 1
C-L -24.9361 -2.5639 -19.658 -47.158 27 5 0 1650 0 7 3
D-E -7.4292 0.0 -32.2283 -39.6575 21 5 0 1611 0 0 0
D-F -3.4657 -21.1277 -29.4834 -54.0767 33 2 0 1132 2 4 0
D-G 0.0 0.0 -12.3984 -12.3984 22 0 0 717 0 3 5
D-H 0.0 0.0 -0.0256 -0.0256 2 0 0 9 0 0 0
D-K -27.4591 -2.5255 -51.8314 -81.816 29 8 0 2064 0 7 4
D-L -81.8567 2.7755 -105.311 -184.3921 56 9 1 4310 0 18 26
E-F -10.7002 -43.0731 317.648 263.8747 187 28 12 18379 3 28 25
F-L 0.0 -2.5984 -22.3441 -24.9425 33 11 0 1711 0 2 2
G-H -6.0863 -35.0194 235.614 194.5083 185 19 11 19104 3 28 26
G-I 0.0 0.0 -0.0551 -0.0551 6 0 0 39 0 0 1
G-J -11.5633 -3.3563 -42.7435 -57.663 26 2 0 1805 0 6 4
H-I -14.2414 -3.1532 -48.4919 -65.8865 27 4 0 1929 0 7 4
H-J -82.9728 3.5918 -108.523 -187.904 54 10 1 4420 0 18 26
I-J -6.9972 -36.8541 213.954 170.1027 188 24 11 19415 4 28 27
K-L -5.5901 -41.6235 283.814 236.6005 189 21 11 18506 5 28 27