3Q16

linkage between the bacterial acid stress and stringent responses: the structure of the inducible lysine decarboxylase

• Total interactions analyzed: 10
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 124
  • Norm. En. per Res.: -2.759
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-C	-56.0664	42.5158	-328.567	-342.1176	124	16	9	13876	1	45	34
A-D	-41.5523	36.8861	-298.236	-302.9022	126	12	10	13283	1	45	37
B-D	-54.919	40.3582	-315.92	-330.4808	121	15	9	13505	1	45	36
B-E	-41.9603	30.1921	-316.438	-328.2062	125	14	9	13892	1	45	34
C-E	-71.5651	45.7788	-305.574	-331.3604	128	15	10	13783	1	48	40

Interface residues

• A-C: ALA106C, ALA109C, ALA50A, ALA546A, ALA552A, ALA559A, ALA5A, ALA81C, ALA83C, ARG206C, ARG20C, ARG24C, ARG423A, ARG431A, ARG441A, ARG443A, ARG51A, ARG551A, ARG558A, ARG565A, ARG585A, ARG97C, ASN2A, ASN37A, ASN48A, ASN49A, ASN568A, ASN84C, ASN94C, ASP38A, ASP40A, ASP41A, ASP447A, ASP542A, ASP555A, ASP561A, ASP60C, ASP90C, ASP95C, CYS67C, GLN202C, GLN32A, GLN99C, GLU104C, GLU123C, GLU16C, GLU17C, GLU199C, GLU21C, GLU430A, GLU438A, GLU445A, GLU47A, GLU520A, GLU582A, GLU75C, GLY108C, GLY11C, GLY427A, HIS521A, ILE100C, ILE113C, ILE33A, ILE46A, ILE4A, ILE541A, LEU107C, LEU42A, LEU43A, LEU442A, LEU45A, LEU52A, LEU547A, LEU549A, LEU550A, LEU553A, LEU562A, LEU564A, LEU79C, LEU89C, LEU93C, LEU96C, LEU98C, LYS116C, LYS15C, LYS417C, LYS434A, LYS437A, LYS44A, LYS543A, LYS545A, LYS557A, LYS567A, MET10C, MET569A, PHE102C, PHE103C, PHE14C, PHE435A, PHE450A, PHE82C, PRO18C, PRO36A, SER101C, SER446A, SER548A, SER71C, SER87C, SER92C, THR444A, THR544A, THR554A, THR85C, THR88C, TRP59C, TYR105C, TYR13C, TYR35A, TYR517A, TYR86C, VAL12C, VAL34A, VAL3A, VAL91C
• A-D: ALA106A, ALA109A, ALA50D, ALA546D, ALA552D, ALA559D, ALA5D, ALA81A, ALA83A, ARG206A, ARG20A, ARG24A, ARG423D, ARG431D, ARG441D, ARG443D, ARG51D, ARG551D, ARG558D, ARG565D, ARG585D, ARG97A, ASN37D, ASN48D, ASN49D, ASN563D, ASN568D, ASN84A, ASN94A, ASP38D, ASP40D, ASP41D, ASP447D, ASP542D, ASP555D, ASP561D, ASP60A, ASP90A, ASP95A, CYS67A, GLN202A, GLN32D, GLN99A, GLU104A, GLU123A, GLU16A, GLU17A, GLU199A, GLU21A, GLU430D, GLU438D, GLU445D, GLU47D, GLU520D, GLU582D, GLU75A, GLY108A, GLY11A, GLY427D, HIS521D, ILE100A, ILE113A, ILE33D, ILE46D, ILE4D, LEU107A, LEU42D, LEU43D, LEU442D, LEU45D, LEU52D, LEU547D, LEU549D, LEU550D, LEU553D, LEU562D, LEU564D, LEU79A, LEU89A, LEU93A, LEU96A, LEU98A, LYS116A, LYS15A, LYS198A, LYS417A, LYS434D, LYS437D, LYS44D, LYS543D, LYS545D, LYS557D, LYS567D, MET10A, MET569D, PHE102A, PHE103A, PHE14A, PHE435D, PHE450D, PHE82A, PRO131A, PRO18A, PRO36D, SER101A, SER446D, SER548D, SER71A, SER87A, SER92A, THR444D, THR544D, THR554D, THR85A, THR88A, TRP59A, TYR105A, TYR13A, TYR203A, TYR35D, TYR574D, TYR86A, VAL12A, VAL34D, VAL3D, VAL91A
• B-D: ALA106D, ALA109D, ALA50B, ALA546B, ALA552B, ALA559B, ALA5B, ALA81D, ALA83D, ARG206D, ARG20D, ARG24D, ARG423B, ARG431B, ARG441B, ARG443B, ARG51B, ARG551B, ARG558B, ARG565B, ARG585B, ARG97D, ASN37B, ASN48B, ASN49B, ASN568B, ASN84D, ASN94D, ASP38B, ASP40B, ASP41B, ASP447B, ASP542B, ASP555B, ASP561B, ASP60D, ASP90D, ASP95D, CYS67D, GLN202D, GLN32B, GLN99D, GLU104D, GLU123D, GLU16D, GLU17D, GLU199D, GLU21D, GLU430B, GLU438B, GLU445B, GLU47B, GLU520B, GLU582B, GLU75D, GLY108D, GLY11D, GLY427B, HIS521B, ILE100D, ILE113D, ILE33B, ILE46B, ILE4B, ILE541B, ILE6B, LEU107D, LEU42B, LEU43B, LEU442B, LEU45B, LEU52B, LEU547B, LEU549B, LEU550B, LEU553B, LEU562B, LEU564B, LEU79D, LEU89D, LEU93D, LEU96D, LEU98D, LYS116D, LYS15D, LYS417D, LYS434B, LYS44B, LYS543B, LYS545B, LYS557B, LYS567B, PHE102D, PHE103D, PHE14D, PHE435B, PHE450B, PHE82D, PRO18D, PRO36B, SER101D, SER446B, SER548B, SER71D, SER87D, SER92D, THR444B, THR544B, THR554B, THR85D, THR88D, TRP59D, TYR105D, TYR13D, TYR35B, TYR574B, TYR86D, VAL12D, VAL34B, VAL3B, VAL91D
• B-E: ALA106B, ALA109B, ALA50E, ALA546E, ALA552E, ALA559E, ALA5E, ALA81B, ALA83B, ARG206B, ARG20B, ARG24B, ARG423E, ARG431E, ARG441E, ARG443E, ARG51E, ARG551E, ARG558E, ARG565E, ARG585E, ARG97B, ASN2E, ASN37E, ASN48E, ASN49E, ASN568E, ASN84B, ASN94B, ASP38E, ASP40E, ASP41E, ASP447E, ASP542E, ASP555E, ASP561E, ASP60B, ASP90B, ASP95B, CYS67B, GLN202B, GLN32E, GLN99B, GLU104B, GLU123B, GLU16B, GLU17B, GLU199B, GLU21B, GLU430E, GLU438E, GLU445E, GLU47E, GLU582E, GLU75B, GLY108B, GLY11B, GLY427E, HIS23E, HIS521E, ILE100B, ILE113B, ILE33E, ILE46E, ILE4E, ILE541E, ILE6E, LEU107B, LEU42E, LEU43E, LEU442E, LEU45E, LEU52E, LEU547E, LEU549E, LEU550E, LEU553E, LEU562E, LEU564E, LEU79B, LEU89B, LEU93B, LEU96B, LEU98B, LYS116B, LYS15B, LYS417B, LYS434E, LYS44E, LYS543E, LYS545E, LYS557E, LYS567E, MET569E, PHE102B, PHE103B, PHE14B, PHE435E, PHE450E, PHE451E, PHE82B, PRO131B, PRO18B, PRO36E, SER101B, SER446E, SER548E, SER71B, SER87B, SER92B, THR444E, THR544E, THR554E, THR85B, THR88B, TRP59B, TYR105B, TYR13B, TYR35E, TYR574E, TYR86B, VAL12B, VAL34E, VAL3E, VAL91B
• C-E: ALA106E, ALA109E, ALA50C, ALA546C, ALA552C, ALA559C, ALA5C, ALA81E, ALA83E, ARG206E, ARG20E, ARG24E, ARG423C, ARG431C, ARG441C, ARG443C, ARG51C, ARG551C, ARG558C, ARG565C, ARG585C, ARG97E, ASN2C, ASN37C, ASN48C, ASN49C, ASN563C, ASN568C, ASN84E, ASN94E, ASP38C, ASP40C, ASP41C, ASP447C, ASP542C, ASP555C, ASP561C, ASP60E, ASP90E, ASP95E, CYS67E, GLN202E, GLN32C, GLN99E, GLU104E, GLU123E, GLU16E, GLU17E, GLU199E, GLU21E, GLU430C, GLU438C, GLU445C, GLU47C, GLU520C, GLU582C, GLU75E, GLY108E, GLY11E, GLY427C, HIS521C, ILE100E, ILE113E, ILE33C, ILE46C, ILE4C, ILE6C, LEU107E, LEU42C, LEU43C, LEU442C, LEU45C, LEU52C, LEU547C, LEU549C, LEU550C, LEU553C, LEU562C, LEU564C, LEU79E, LEU89E, LEU93E, LEU96E, LEU98E, LYS116E, LYS15E, LYS198E, LYS417E, LYS434C, LYS44C, LYS543C, LYS545C, LYS557C, LYS567C, MET10E, MET569C, PHE102E, PHE103E, PHE14E, PHE435C, PHE450C, PHE82E, PRO131E, PRO18E, PRO36C, SER101E, SER446C, SER548C, SER71E, SER87E, SER92E, THR444C, THR544C, THR554C, THR85E, THR88E, TRP59E, TYR105E, TYR13E, TYR203E, TYR35C, TYR517C, TYR574C, TYR86E, VAL12E, VAL34C, VAL3C, VAL91E