3PNW
crystal structure of the tudor domain of human tdrd3 in complex with an anti-tdrd3 fab
Total interactions analyzed 276
Total true interactions 56
Strongest Interaction Chains E-F
Int. Res. 47
Norm. En. per Res. -4.1299
Hub Node A(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
Download
Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -37.2481 -7.7322 -476.434 -521.4143 195 12 12 18007 0 14 13
A-C -14.7803 0.0 -77.679 -92.4593 34 1 0 2804 0 4 1
A-G 0.0 0.0 -15.4574 -15.4574 28 1 0 875 0 5 4
A-H 0.0 0.0 -31.0896 -31.0896 28 2 0 1126 0 0 0
A-S 0.0 0.0 -1.2628 -1.2628 7 0 0 138 0 5 5
B-C -36.8014 -23.6916 -130.309 -190.802 48 8 2 4341 1 9 2
B-E -18.1835 0.0 -88.4595 -106.643 42 4 0 2757 0 1 5
B-H 0.0 0.0 -19.1277 -19.1277 39 0 0 1111 0 3 4
B-K -46.7891 0.0 -199.319 -246.1081 98 10 0 7129 0 9 8
C-G 0.0 0.0 -3.7646 -3.7646 9 0 0 258 0 0 0
C-H 0.0 3.8182 -1.2952 2.5229 17 0 0 219 0 5 7
D-E -39.8429 -8.3843 -471.607 -519.8342 191 9 13 18089 0 14 12
D-F -15.5962 0.0 -72.5241 -88.1203 32 2 0 2755 0 6 1
D-J -10.9135 -41.4038 -33.2923 -85.6096 30 2 0 1382 4 6 4
D-K 0.0 0.0 -28.5619 -28.5619 28 1 0 1130 0 1 1
D-M 0.0 0.0 -0.558 -0.558 6 0 0 87 0 6 5
E-F -19.0 -30.3774 -144.728 -194.1055 47 4 3 4490 1 9 2
E-H -52.8547 0.0 -206.105 -258.9597 98 10 0 7262 0 9 8
E-J 0.0 0.0 -0.0021 -0.0021 2 0 0 1 0 1 0
E-K 0.0 0.0 -27.0573 -27.0573 42 0 0 1396 0 3 4
F-J 0.0 0.0 -6.257 -6.257 12 0 0 320 0 0 0
F-K 0.0 7.1752 -1.6677 5.5075 16 0 0 245 0 5 8
G-H -38.5535 -9.0302 -475.809 -523.3927 189 10 12 17932 0 14 12
G-I -19.6379 0.0 -81.0346 -100.6725 34 1 0 2880 0 4 1
G-V 0.0 4.281 -0.7141 3.5669 10 0 0 123 0 8 8
H-I -26.938 -23.9734 -129.704 -180.6154 49 5 3 4307 1 9 2
J-K -32.5962 -9.2234 -528.171 -569.9907 194 10 12 19197 0 14 14
J-L -11.9276 0.0 -77.3939 -89.3215 34 1 0 2949 0 4 1
J-P 0.0 5.1846 -1.1068 4.0778 16 0 0 187 0 8 8
J-S 0.0 0.0 -0.4243 -0.4243 2 0 0 29 0 2 1
K-L -15.7037 -43.3586 -133.866 -192.9282 48 7 3 4497 3 9 2
M-N -38.635 -8.2821 -518.06 -564.9771 194 15 13 18918 0 14 12
M-O -12.9785 0.0 -84.4396 -97.4181 36 2 0 3046 0 4 1
M-P 0.0 0.0 -0.021 -0.021 12 0 0 19 0 4 2
M-R 0.0 0.0 -0.0087 -0.0087 4 0 0 7 0 0 0
N-O -17.057 -25.4117 -139.637 -182.1057 47 6 2 4369 1 9 2
N-P -13.009 0.0 -65.7778 -78.7868 46 3 0 2612 0 2 2
N-Q -12.9797 0.0 -30.3045 -43.2842 41 2 1 1477 0 2 3
N-R 0.0 0.0 -0.6312 -0.6312 6 0 0 82 0 3 4
N-W -52.0982 0.0 -198.615 -250.7132 100 16 0 7179 0 9 9
P-Q -36.1765 -8.3425 -524.509 -569.028 192 12 12 19038 0 14 12
P-R -16.2255 0.0 -86.6797 -102.9052 35 2 0 3077 0 4 1
P-S 0.0 0.0 -7.1436 -7.1436 7 1 0 170 0 0 0
Q-R -19.5681 -21.316 -134.138 -175.0221 48 6 2 4328 1 9 2
Q-S 0.0 0.0 -0.2465 -0.2465 5 0 0 36 0 0 0
Q-T -43.7087 0.0 -204.042 -247.7507 103 15 0 7456 0 9 8
Q-W -22.2453 0.0 -90.8564 -113.1017 39 7 0 2803 0 0 5
S-T -43.4204 -7.4778 -509.705 -560.6032 193 16 12 18857 0 14 13
S-U -17.3512 0.0 -73.3983 -90.7495 34 2 0 2823 0 4 1
S-V 0.0 0.0 -0.011 -0.011 2 0 0 3 0 1 0
T-U -9.7117 -25.6777 -135.903 -171.2924 47 5 3 4354 1 9 2
T-V -9.5681 0.0 -61.8043 -71.3724 43 6 0 2590 0 2 2
T-W -2.9834 0.0 -23.8726 -26.856 36 0 1 1210 0 2 3
V-W -35.2976 -9.6646 -521.812 -566.7742 192 16 13 18884 0 13 12
V-X -10.7505 0.0 -80.8783 -91.6288 34 3 0 2976 0 4 1
W-X -13.1308 -24.9816 -132.079 -170.1914 46 7 2 4330 1 9 2