3PIQ
crystal structure of human 2909 fab, a quaternary structure-specific antibody against hiv-1
Total interactions analyzed 66
Total true interactions 28
Strongest Interaction Chains G-K
Int. Res. 23
Norm. En. per Res. -3.0359
Hub Node A(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
H-L -46.2941 -47.0111 -407.273 -500.5782 173 22 11 17385 4 25 25
H-E -19.0744 1.351 -106.764 -124.4874 55 12 1 4492 0 12 25
H-F -8.8154 -5.3631 -33.9232 -48.1016 27 1 0 1729 0 7 3
H-I 0.0 -3.7462 -5.2125 -8.9587 9 3 0 211 0 1 1
L-E -8.9622 -6.284 -38.4209 -53.6671 27 1 0 1815 0 6 3
L-F 0.0 0.0 -0.1582 -0.1582 6 0 0 67 0 0 1
L-I 0.0 0.0 -29.1566 -29.1566 43 2 0 2075 0 5 3
A-B -38.7662 -39.927 -368.522 -447.2152 168 10 10 16023 4 23 25
A-G -15.6717 4.8775 -94.9442 -105.7384 51 3 1 4102 0 13 23
A-I -7.5928 -4.8323 -33.1152 -45.5402 28 1 0 1661 0 7 3
A-J 0.0 0.0 -21.4273 -21.4273 27 3 0 1181 0 0 0
B-G -8.2465 -4.8952 -46.9423 -60.084 28 3 0 1918 0 7 3
B-I 0.0 0.0 -0.0385 -0.0385 6 0 0 26 0 0 1
C-D -49.5953 -47.8066 -406.179 -503.5809 169 17 10 16661 5 22 23
C-F 0.0 0.0 -0.6477 -0.6477 9 0 0 110 0 0 0
D-E 0.0 0.0 -1.1845 -1.1845 11 0 0 153 0 1 1
D-F 0.0 0.0 -10.7965 -10.7965 32 0 0 986 0 5 4
D-G -11.8807 -9.9213 -73.1052 -94.9072 48 2 0 2982 0 12 8
D-J 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
E-F -37.6856 -47.7081 -395.861 -481.2546 170 13 12 16969 4 25 23
F-G 0.0 0.0 -10.2569 -10.2569 22 1 1 665 0 4 5
F-I 0.0 1.1113 -6.2523 -5.141 12 0 0 454 0 5 3
G-I -51.7734 -43.9235 -392.14 -487.8368 173 23 12 16708 4 20 23
G-J 0.0 0.0 -9.4599 -9.4599 22 0 0 620 0 0 0
G-K -16.7163 0.0 -53.1092 -69.8255 23 5 0 1721 0 1 0
I-J 0.0 0.0 -2.2611 -2.2611 8 0 0 158 0 0 0
I-K 0.0 0.0 -0.1688 -0.1688 2 0 0 18 0 1 0
J-K -55.0155 -47.5007 -413.003 -515.5192 170 19 10 17035 4 24 24