3P4M

crystal structure of h2-kb in complex with the np205-lcmv epitope ytvkypnl, an 8-mer peptide from the lcmv

• Total interactions analyzed: 15
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-F
  • Int. Res.: 81
  • Norm. En. per Res.: -4.2216
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-28.9969	-70.2181	-338.171	-437.386	117	21	1	11981	3	37	33
A-D	-2.5066	-12.6865	-133.136	-148.329	81	7	0	5522	5	31	29
A-F	-67.2263	9.2664	-283.991	-341.951	81	16	3	10110	0	6	6
C-D	-67.9629	11.4498	-294.178	-350.6911	86	19	3	10493	0	6	6
D-E	-46.7726	-73.278	-324.934	-444.9846	118	16	1	11672	4	35	32

Interface residues

• A-B: ALA117A, ALA11A, ALA125A, ALA236A, ARG111A, ARG12B, ARG14A, ARG194A, ARG202A, ARG21A, ARG234A, ARG35A, ARG48A, ARG6A, ARG97B, ASN24B, ASP119A, ASP122A, ASP238A, ASP30A, ASP37A, ASP53B, ASP59B, ASP85B, ASP96B, ASP98B, CYS121A, CYS25B, GLN114A, GLN115A, GLN242A, GLN29B, GLN2B, GLN6B, GLN87A, GLN8B, GLN96A, GLU102A, GLU229A, GLU232A, GLU24A, GLU32A, GLY120A, GLY207A, GLY237A, GLY239A, HIS13B, HIS188A, HIS191A, HIS192A, HIS31B, HIS34B, HIS67B, HIS93A, ILE124A, ILE1B, ILE22B, ILE35B, ILE64B, ILE95A, ILE98A, LEU206A, LEU230A, LEU65B, LYS243A, LYS3B, LYS58B, MET23A, MET54B, MET99B, PHE241A, PHE30B, PHE56B, PHE62B, PHE8A, PRO14B, PRO15B, PRO235A, PRO32B, PRO33B, SER11B, SER13A, SER193A, SER246A, SER52B, SER55B, SER57B, SER61B, SER92A, SER99A, THR10A, THR190A, THR200A, THR233A, THR240A, THR28B, THR94A, TRP204A, TRP244A, TRP60B, TRP95B, TYR10B, TYR113A, TYR116A, TYR118A, TYR123A, TYR26B, TYR27A, TYR63B, TYR7A, VAL12A, VAL231A, VAL25A, VAL27B, VAL97A, VAL9A, VAL9B
• A-D: ALA158A, ARG108A, ARG108D, ARG157A, ARG157D, ARG169A, ARG169D, ARG170A, ASN176A, ASP106A, ASP106D, ASP212A, ASP212D, GLN218A, GLN218D, GLN264A, GLN264D, GLU161A, GLU161D, GLU166A, GLU166D, GLU222A, GLU222D, GLU223A, GLU223D, GLU268A, GLU268D, GLY104A, GLY104D, GLY107A, GLY107D, GLY162A, GLY1A, GLY1D, GLY221A, GLY265A, GLY265D, HIS260A, HIS260D, HIS263A, HIS263D, ILE213A, ILE213D, ILE225A, ILE225D, LEU109A, LEU109D, LEU172A, LEU180D, LEU215A, LEU215D, LEU266A, LEU266D, LEU270A, LYS131A, LYS131D, LYS173A, LYS173D, MET0A, PRO267A, PRO267D, PRO269A, PRO269D, PRO2A, PRO2D, SER105A, SER105D, THR182A, THR214A, THR214D, THR216A, THR216D, THR271D, TRP217A, TYR262A, TYR262D, VAL103D, VAL165A, VAL165D, VAL261A, VAL261D
• A-F: ALA117A, ALA139A, ALA140A, ALA150A, ALA153A, ALA158A, ALA67A, ARG155A, ARG170A, ARG62A, ARG79A, ASN70A, ASN7F, ASP77A, CYS101A, CYS164A, GLN114A, GLN115A, GLN65A, GLN72A, GLN96A, GLU152A, GLU166A, GLU24A, GLU55A, GLU63A, GLU71A, GLY100A, GLY26A, GLY69A, ILE124A, ILE142A, ILE95A, ILE98A, LEU156A, LEU160A, LEU168A, LEU5A, LEU78A, LEU81A, LEU8F, LYS144A, LYS146A, LYS4F, LYS66A, PHE33A, PHE36A, PHE74A, PHE8A, PRO6F, SER73A, SER99A, THR143A, THR163A, THR2F, THR64A, THR80A, TRP133A, TRP147A, TRP167A, TYR116A, TYR118A, TYR123A, TYR159A, TYR171A, TYR1F, TYR22A, TYR45A, TYR59A, TYR5F, TYR7A, TYR84A, TYR85A, VAL165A, VAL25A, VAL28A, VAL34A, VAL3F, VAL76A, VAL97A, VAL9A
• C-D: ALA117D, ALA139D, ALA140D, ALA150D, ALA153D, ALA158D, ALA67D, ARG155D, ARG157D, ARG170D, ARG62D, ARG6D, ARG75D, ASN70D, ASN7C, ASP77D, CYS164D, GLN114D, GLN115D, GLN65D, GLN72D, GLN96D, GLU152D, GLU166D, GLU24D, GLU58D, GLU63D, GLU71D, GLY100D, GLY151D, GLY26D, GLY69D, ILE124D, ILE142D, ILE95D, ILE98D, LEU156D, LEU160D, LEU168D, LEU5D, LEU78D, LEU81D, LEU8C, LYS144D, LYS146D, LYS4C, LYS66D, LYS68D, MET52D, PHE33D, PHE36D, PHE74D, PHE8D, PRO6C, SER73D, SER99D, THR143D, THR163D, THR2C, THR64D, THR80D, TRP133D, TRP147D, TRP167D, TYR113D, TYR116D, TYR118D, TYR123D, TYR159D, TYR171D, TYR1C, TYR22D, TYR45D, TYR59D, TYR5C, TYR7D, TYR84D, TYR85D, VAL165D, VAL25D, VAL28D, VAL34D, VAL3C, VAL76D, VAL97D, VAL9D
• D-E: ALA117D, ALA11D, ALA125D, ALA236D, ARG111D, ARG12E, ARG14D, ARG194D, ARG202D, ARG21D, ARG234D, ARG35D, ARG48D, ARG6D, ARG97E, ASN24E, ASP119D, ASP122D, ASP238D, ASP30D, ASP37D, ASP53E, ASP59E, ASP85E, ASP96E, ASP98E, CYS121D, CYS25E, GLN114D, GLN115D, GLN242D, GLN29E, GLN2E, GLN6E, GLN87D, GLN8E, GLN96D, GLU102D, GLU229D, GLU232D, GLU24D, GLU32D, GLY100D, GLY120D, GLY207D, GLY237D, GLY239D, HIS13E, HIS188D, HIS191D, HIS192D, HIS31E, HIS34E, HIS67E, HIS93D, ILE124D, ILE1E, ILE22E, ILE64E, ILE7E, ILE95D, ILE98D, LEU206D, LEU230D, LEU65E, LYS243D, LYS3E, LYS58E, MET23D, MET54E, MET99E, PHE241D, PHE30E, PHE56E, PHE62E, PHE8D, PRO14E, PRO15E, PRO235D, PRO32E, PRO33E, SER11E, SER13D, SER193D, SER246D, SER52E, SER55E, SER57E, SER61E, SER92D, SER99D, THR10D, THR190D, THR200D, THR233D, THR240D, THR28E, THR94D, TRP204D, TRP244D, TRP60E, TRP95E, TYR10E, TYR113D, TYR116D, TYR118D, TYR123D, TYR26E, TYR27D, TYR63E, TYR7D, VAL12D, VAL231D, VAL25D, VAL27E, VAL97D, VAL9D, VAL9E