3OMG

structure of human snd1 extended tudor domain in complex with the symmetrically dimethylated arginine piwil1 peptide r14me2s

• Total interactions analyzed: 6
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 55
  • Norm. En. per Res.: -2.5537
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-19.8535	-65.622	-54.9798	-140.4553	55	11	0	2752	6	26	24
A-C	0.0	-4.7954	-49.1865	-53.9819	31	0	0	1852	0	8	1
B-D	-2.6676	-1.1682	-57.8175	-61.6533	31	0	0	2032	0	8	3

Interface residues

• A-B: ALA809B, ALA813B, ALA835A, ALA845B, ALA888B, ARG731A, ARG732A, ARG749A, ARG769A, ARG787A, ARG819B, ARG889B, ARG894B, ASN891B, ASP808B, ASP812B, ASP815B, ASP820B, ASP846B, CYS826B, CYS837A, GLN825B, GLN843B, GLU734A, GLU751A, GLU795A, GLU858B, GLU883B, GLY733A, GLY836A, GLY849B, ILE821B, LEU833A, LEU860B, LEU890B, LYS848B, LYS886B, PHE735A, PHE844B, PRO782A, PRO790A, PRO838A, SER785A, SER816B, SER834A, SER847B, SER884B, SER887B, THR786A, THR811B, THR824B, TYR728A, VAL750A, VAL788A, VAL851B
• A-C: ALA4C, ARG3C, ASN768A, ASN823A, ASP700A, ASP742A, CYS826A, GLN699A, GLN7C, GLN822A, GLN825A, GLU689A, GLU702A, GLU708A, GLY2C, GLY6C, GLY704A, GLY743A, LEU707A, PHE686A, PHE740A, PRO684A, THR688A, THR705A, THR824A, TYR746A, TYR766A, VAL685A, VAL687A, VAL701A, VAL741A
• B-D: ALA4D, ARG3D, ASN768B, ASN823B, ASP700B, ASP742B, CYS826B, GLN699B, GLN7D, GLN822B, GLN825B, GLU689B, GLU708B, GLU744B, GLY6D, GLY704B, LEU707B, MET711B, PHE686B, PHE740B, PRO684B, THR688B, THR705B, THR824B, TYR746B, TYR766B, VAL685B, VAL687B, VAL701B, VAL741B, VAL818B