3OMC

structure of human snd1 extended tudor domain in complex with the symmetrically dimethylated arginine piwil1 peptide r4me2s

• Total interactions analyzed: 6
• Total true interactions: 2
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 38
  • Norm. En. per Res.: -3.2611
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-8.1591	-82.4061	-75.7749	-166.3402	58	6	0	2833	7	27	26
A-C	-10.6051	-33.2099	-80.1072	-123.9222	38	7	3	3104	3	13	4

Interface residues

• A-B: ALA809B, ALA813B, ALA835A, ALA845B, ALA888B, ARG731A, ARG732A, ARG749A, ARG769A, ARG787A, ARG810B, ARG819B, ARG889B, ARG894B, ASN891B, ASP807B, ASP808B, ASP812B, ASP815B, ASP820B, ASP846B, CYS826B, CYS837A, GLN825B, GLN843B, GLU734A, GLU751A, GLU795A, GLU858B, GLU883B, GLY733A, GLY836A, GLY849B, GLY859B, ILE821B, LEU833A, LEU860B, LEU890B, LEU892B, LYS848B, LYS886B, PHE735A, PHE844B, PRO782A, PRO838A, SER785A, SER816B, SER834A, SER847B, SER884B, SER887B, THR786A, THR811B, THR824B, TYR895B, VAL788A, VAL814B, VAL851B
• A-C: ALA4C, ALA6C, ALA8C, ARG5C, ARG715A, ARG7C, ASN823A, ASP700A, ASP742A, ASP765A, GLN699A, GLN706A, GLN792A, GLN822A, GLN825A, GLU689A, GLU702A, GLU708A, GLU712A, GLU744A, GLY2C, GLY704A, LEU707A, LYS709A, MET711A, PHE686A, PHE740A, PRO684A, THR688A, THR703A, THR705A, THR824A, TYR746A, TYR766A, VAL685A, VAL687A, VAL698A, VAL701A