3OHD
structure of the thermus thermophilus ribosome complexed with erythromycin. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes.
Total interactions analyzed 210
Total true interactions 24
Strongest Interaction Chains J-N
Int. Res. 55
Norm. En. per Res. -5.606
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -0.0348 -0.0348 4 0 0 17 0 1 1
B-E 0.0 0.0 -0.1489 -0.1489 8 0 0 68 0 0 2
B-H -9.8842 -36.0667 -68.8084 -114.7593 33 5 0 2723 2 17 17
C-D 0.0 0.0 -0.937 -0.937 7 0 0 139 0 0 7
C-E 0.0 -20.8193 -4.7376 -25.5569 12 0 0 373 0 3 5
C-J -8.8262 5.9615 -59.6571 -62.5218 54 1 1 3044 0 14 28
C-N 0.0 10.8807 -212.576 -201.6953 76 9 3 8806 0 19 39
D-E 0.0 -30.0926 -53.2998 -83.3924 47 7 0 2607 3 8 10
E-H -13.2461 -47.6594 -123.079 -183.9846 61 11 2 5829 3 40 42
F-O 0.0 0.0 -2.5173 -2.5173 5 1 0 149 0 3 3
F-R -61.1202 -30.5275 -239.026 -330.6737 84 43 9 10100 2 13 22
G-I 0.0 2.0752 -39.479 -37.4038 38 5 4 2313 0 5 8
G-K 0.0 0.0 -72.7054 -72.7054 31 13 4 2715 0 2 8
H-L 0.0 0.0 -9.5423 -9.5423 9 0 0 463 0 0 1
H-Q 0.0 4.6267 -26.3069 -21.6802 15 3 0 1229 0 2 9
I-J 0.0 -1.6953 -26.3783 -28.0736 18 1 0 1167 0 9 15
I-N 0.0 0.0 -13.8686 -13.8686 9 0 0 491 0 0 0
J-N -35.8903 -35.0964 -237.342 -308.3286 55 21 6 8993 4 15 33
K-R -6.5256 -16.2432 -59.9377 -82.7065 29 8 1 2674 1 14 20
L-Q 0.0 0.0 -45.7969 -45.7969 22 9 4 2285 0 0 8
M-S 0.0 15.246 -75.4872 -60.2412 45 5 3 3575 0 10 21
M-U 0.0 0.0 -3.1168 -3.1168 12 0 0 358 0 4 9
N-S 0.0 0.0 -0.141 -0.141 3 0 0 42 0 0 0
O-Q 0.0 -1.1077 -0.372 -1.4797 11 0 0 119 0 7 6