3OGY
structure of the thermus thermophilus ribosome complexed with chloramphenicol. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes.
Total interactions analyzed 210
Total true interactions 25
Strongest Interaction Chains J-N
Int. Res. 55
Norm. En. per Res. -5.3732
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -0.0243 -0.0243 4 0 0 16 0 1 1
B-E 0.0 0.0 -0.0981 -0.0981 7 0 0 48 0 0 2
B-H -3.9879 -33.8647 -71.0941 -108.9467 32 6 0 2769 1 17 16
C-D 0.0 0.0 -0.8459 -0.8459 7 0 0 145 0 0 6
C-E 0.0 -22.4191 -6.6925 -29.1116 12 2 0 483 0 4 5
C-J -4.8169 2.766 -77.6273 -79.6782 56 0 2 3479 0 16 28
C-N 0.0 14.1659 -218.725 -204.5591 76 11 3 8889 0 18 37
D-E 0.0 -38.7489 -51.2524 -90.0013 47 8 0 2637 3 6 10
E-H -10.1379 -45.8339 -120.478 -176.4498 62 9 2 5690 3 40 41
F-O 0.0 0.0 -1.5305 -1.5305 3 0 0 132 0 2 3
F-R -44.4459 -32.1796 -262.951 -339.5766 85 37 10 10235 1 13 21
G-I 0.0 1.9367 -37.9528 -36.0161 37 5 4 2220 0 6 9
G-K -5.8071 0.0 -64.8321 -70.6392 31 15 4 2776 0 2 8
G-U 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 1 0
H-L 0.0 0.0 -10.8288 -10.8288 10 0 0 486 0 0 1
H-Q 0.0 5.679 -24.9907 -19.3117 14 3 0 1171 0 2 8
I-J 0.0 0.0 -26.4346 -26.4346 18 4 0 1192 0 9 16
I-N 0.0 0.0 -13.6283 -13.6283 9 0 0 484 0 0 0
J-N -31.0295 -42.1343 -222.36 -295.5238 55 28 6 8929 4 16 36
K-R -18.897 -19.604 -54.7015 -93.2025 30 10 2 2695 1 14 16
L-Q 0.0 0.0 -40.1094 -40.1094 23 8 4 2350 0 0 8
M-S 0.0 10.5893 -76.1439 -65.5546 44 8 3 3885 0 9 22
M-U 0.0 0.0 -2.7927 -2.7927 11 0 0 345 0 3 9
N-S 0.0 0.0 -0.094 -0.094 3 0 0 30 0 0 0
O-Q 0.0 -1.0913 -0.3088 -1.4001 10 0 0 98 0 7 6