3OGE
structure of the thermus thermophilus ribosome complexed with chloramphenicol. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes.
Total interactions analyzed 210
Total true interactions 25
Strongest Interaction Chains J-N
Int. Res. 56
Norm. En. per Res. -5.4021
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -0.1819 -0.1819 4 0 0 55 0 2 3
B-E 0.0 0.0 -0.112 -0.112 7 0 0 57 0 0 2
B-H -3.8844 -33.8412 -71.1474 -108.8729 32 5 0 2767 1 17 16
C-D 0.0 0.0 -0.4816 -0.4816 7 0 0 111 0 0 6
C-E 0.0 -22.5131 -3.5366 -26.0497 13 3 0 614 0 4 5
C-J 0.0 2.7725 -76.4885 -73.716 55 0 2 3446 0 16 28
C-N -2.2241 14.1445 -226.409 -214.4887 76 10 3 8896 0 18 37
D-E 0.0 -38.4402 -51.9728 -90.413 47 8 0 2636 3 6 10
E-H -9.8864 -46.863 -123.215 -179.9644 60 8 2 5659 3 40 41
F-O 0.0 0.0 -1.427 -1.427 3 0 0 124 0 2 3
F-R -55.2795 -32.7428 -261.513 -349.5353 85 38 10 10228 2 13 21
G-I 0.0 1.9302 -38.0839 -36.1538 37 5 4 2226 0 6 9
G-K -4.0711 0.0 -61.8942 -65.9653 30 7 4 2424 0 2 7
G-U 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 1 0
H-L 0.0 0.0 -10.6067 -10.6067 10 0 0 485 0 0 1
H-Q 0.0 5.7073 -25.305 -19.5977 14 3 0 1178 0 2 8
I-J 0.0 0.0 -26.3045 -26.3045 18 4 0 1177 0 9 16
I-N 0.0 0.0 -13.6025 -13.6025 9 0 0 481 0 0 0
J-N -33.53 -42.5736 -226.415 -302.5186 56 28 6 8945 4 16 36
K-R -11.6817 -19.3992 -56.231 -87.3118 30 7 2 2677 1 14 16
L-Q 0.0 0.0 -38.8021 -38.8021 22 6 4 2353 0 0 8
M-S 0.0 10.5699 -79.1148 -68.5449 44 8 3 3880 0 9 22
M-U 0.0 0.0 -2.7669 -2.7669 11 0 0 339 0 3 9
N-S 0.0 0.0 -0.0948 -0.0948 3 0 0 30 0 0 0
O-Q 0.0 -1.0844 -0.3122 -1.3966 10 0 0 99 0 7 6