3OFP
crystal structure of the e. coli ribosome bound to erythromycin. this file contains the 30s subunit of the second 70s ribosome.
Total interactions analyzed 210
Total true interactions 23
Strongest Interaction Chains J-N
Int. Res. 56
Norm. En. per Res. -4.788
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-E 0.0 0.0 -0.3616 -0.3616 8 0 0 95 0 2 3
B-H 0.0 0.0 -0.0038 -0.0038 4 0 0 5 0 1 2
C-D 0.0 0.0 -0.0077 -0.0077 4 0 0 10 0 0 3
C-E 0.0 -3.2738 -4.0674 -7.3411 13 0 0 215 0 8 7
C-J 0.0 -0.5818 -54.9196 -55.5014 58 0 3 2621 0 10 6
C-N -47.2583 -37.9787 -227.869 -313.106 77 33 2 9625 2 34 35
D-E -29.3968 -28.7223 -34.4464 -92.5655 43 10 0 2398 2 14 15
E-H -11.9892 -21.7593 -85.788 -119.5365 50 20 2 4559 1 17 11
F-R -26.2157 1.9563 -140.122 -164.3814 60 29 4 6787 0 13 22
G-I 0.0 7.2422 -37.456 -30.2138 31 4 0 1877 0 12 11
G-K 0.0 0.0 -15.841 -15.841 20 1 2 1085 0 1 2
H-L 0.0 0.0 -10.9764 -10.9764 13 2 1 556 0 0 0
H-Q -4.3473 0.8348 -25.4878 -29.0003 15 0 0 1418 0 3 9
I-J 0.0 0.0 -21.5096 -21.5096 19 3 0 1039 0 8 11
I-N -4.1531 0.0 -11.5956 -15.7487 6 1 0 371 0 0 1
J-N -33.7346 -61.8694 -172.523 -268.127 56 36 5 8713 3 19 29
K-R 0.0 -9.3672 -11.7955 -21.1627 18 1 0 872 0 7 10
K-U -28.347 49.8639 -158.58 -137.0631 75 31 4 9575 2 33 39
L-Q 0.0 0.0 -42.296 -42.296 20 3 4 1991 0 0 8
M-S 0.0 -2.9051 -87.3502 -90.2554 48 10 4 4173 1 9 21
N-S 0.0 13.6978 -50.3268 -36.629 30 9 1 2673 0 6 11
O-Q 0.0 0.0 -0.3814 -0.3814 5 0 0 63 0 1 0
R-U 0.0 -3.5746 -29.8628 -33.4374 25 12 0 2460 4 16 15