3OFO
crystal structure of the e. coli ribosome bound to erythromycin. this file contains the 30s subunit of the first 70s ribosome.
Total interactions analyzed 210
Total true interactions 23
Strongest Interaction Chains J-N
Int. Res. 56
Norm. En. per Res. -5.7583
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-E 0.0 0.0 -0.0151 -0.0151 6 0 0 21 0 2 3
B-H 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 1 2
C-D 0.0 0.0 -0.5564 -0.5564 7 0 0 126 0 0 2
C-E 0.0 0.0 -4.4969 -4.4969 12 1 0 391 0 6 6
C-J 0.0 -0.6701 -65.0002 -65.6702 58 2 3 3037 0 10 10
C-N -11.7952 -52.8598 -218.591 -283.246 75 10 4 9346 4 35 32
D-E 0.0 -39.5244 -22.5801 -62.1045 35 3 0 1427 0 10 10
E-H -2.5249 -5.2052 -95.9921 -103.7223 52 16 2 4610 0 17 14
F-R -15.2122 26.5305 -174.975 -163.6567 60 34 4 7548 2 12 23
G-I 0.0 3.1847 -22.6917 -19.507 33 0 0 1319 0 10 8
G-K 0.0 0.0 -18.3815 -18.3815 30 0 2 1205 0 4 2
H-L 0.0 0.0 -8.3518 -8.3518 11 0 1 481 0 0 0
H-Q 0.0 0.0 -25.8505 -25.8505 18 0 0 1312 0 4 9
I-J 0.0 0.0 -23.3617 -23.3617 18 6 0 1185 0 8 11
I-N 0.0 0.0 -22.1134 -22.1134 9 0 0 561 0 0 1
J-N -68.1067 -67.5125 -186.846 -322.4652 56 42 7 8765 4 19 30
K-R 0.0 0.0 -7.68 -7.68 18 0 0 541 0 5 8
K-U -59.408 49.331 -207.506 -217.583 82 71 4 11929 1 34 42
L-Q 0.0 0.0 -44.8585 -44.8585 22 5 4 2137 0 0 7
M-S -11.7794 2.8271 -66.1184 -75.0708 38 5 0 2972 0 13 18
N-S 0.0 1.6031 -22.7903 -21.1872 30 3 1 1858 0 5 10
O-Q 0.0 0.0 -0.0042 -0.0042 2 0 0 2 0 0 0
R-U 0.0 -12.1888 -26.8078 -38.9966 21 10 0 1757 1 14 9