3OFA
crystal structure of the e. coli ribosome bound to chloramphenicol. this file contains the 30s subunit of the first 70s ribosome.
Total interactions analyzed 210
Total true interactions 23
Strongest Interaction Chains J-N
Int. Res. 57
Norm. En. per Res. -5.2925
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-E 0.0 0.0 -0.0706 -0.0706 6 0 0 38 0 2 3
B-H 0.0 0.0 -0.0005 -0.0005 2 0 0 1 0 1 2
C-D 0.0 0.0 -0.6018 -0.6018 7 0 0 114 0 0 1
C-E 0.0 0.0 -5.9975 -5.9975 10 1 0 335 0 6 6
C-J 0.0 -0.6662 -66.1047 -66.7709 59 2 3 3021 0 11 9
C-N -7.9937 -51.284 -226.837 -286.1147 77 13 5 9320 4 34 31
D-E 0.0 -47.7057 -24.4076 -72.1133 39 4 0 1624 2 11 12
E-H -2.7252 -6.8822 -100.846 -110.4533 53 18 2 4541 0 17 14
F-R -19.3382 19.2274 -173.758 -173.8688 62 36 4 7723 2 12 23
G-I 0.0 3.266 -21.5239 -18.258 32 0 0 1267 1 9 8
G-K 0.0 0.0 -20.0072 -20.0072 30 0 2 1315 0 3 2
H-L 0.0 0.0 -7.7581 -7.7581 11 0 1 470 0 0 0
H-Q 0.0 0.0 -23.8543 -23.8543 17 1 0 1280 0 4 9
I-J 0.0 0.0 -19.1887 -19.1887 19 5 0 1137 0 9 11
I-N 0.0 0.0 -20.3719 -20.3719 8 1 0 526 0 0 1
J-N -43.5672 -59.9882 -198.117 -301.6724 57 32 6 8674 4 18 30
K-R 0.0 5.4695 -10.0357 -4.5662 17 1 0 585 0 5 9
K-U -39.9972 25.5768 -241.088 -255.5084 81 46 4 11440 2 33 41
L-Q 0.0 0.0 -42.7869 -42.7869 20 7 4 2086 0 0 7
M-S -13.7756 6.7657 -50.4777 -57.4876 39 10 0 2783 0 13 21
N-S 0.0 -1.375 -26.5178 -27.8928 29 2 1 2069 0 5 10
O-Q 0.0 0.0 -0.0025 -0.0025 2 0 0 1 0 0 0
R-U 0.0 -10.1546 -28.2273 -38.3819 23 3 0 1616 0 14 9