3NZW
crystal structure of the yeast 20s proteasome in complex with 2b
Total interactions analyzed 435
Total true interactions 102
Strongest Interaction Chains V-W
Int. Res. 144
Norm. En. per Res. -4.9535
Hub Node A(8)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -53.8791 -15.1835 -425.448 -494.5106 136 21 7 15919 1 23 21
A-C 0.0 -10.3947 -16.9667 -27.3614 11 0 1 590 0 2 2
A-D 0.0 0.0 -2.0912 -2.0912 5 0 0 119 0 2 1
A-E 0.0 0.0 -9.6723 -9.6723 9 2 0 398 0 1 0
A-F -4.3176 0.0 -25.35 -29.6676 16 2 0 1031 0 0 1
A-G -68.3142 -32.706 -422.07 -523.0902 131 21 13 15896 3 21 28
A-H -48.6661 -25.2978 -165.91 -239.8739 69 12 3 6457 4 18 17
A-I -22.9151 -7.1748 -118.33 -148.4199 54 4 2 4811 2 16 20
B-C -67.9913 14.4854 -534.994 -588.4999 144 45 9 19300 1 33 37
B-D -8.2193 -16.5894 -18.1192 -42.9279 14 3 0 861 2 8 5
B-E -2.4661 -19.999 -24.7324 -47.1975 16 6 0 847 0 4 2
B-F 0.0 0.0 -23.2655 -23.2655 18 0 0 1020 0 1 1
B-G 0.0 4.4452 -35.7131 -31.2679 17 0 3 1162 0 2 5
B-H 0.0 15.1915 -1.4734 13.7181 9 0 0 95 0 5 4
B-I -2.7003 -6.199 -113.899 -122.7984 50 4 1 4810 0 16 17
B-J -21.0641 -28.8121 -141.43 -191.3062 47 11 2 4706 4 20 23
C-D -80.9792 -46.2393 -381.954 -509.1725 120 27 9 14295 2 28 30
C-E 0.0 0.0 -0.0523 -0.0523 3 0 0 18 0 1 0
C-J -17.1489 -13.8687 -85.3367 -116.3543 44 5 2 3856 2 17 13
C-K -35.2296 -37.9419 -56.2457 -129.4172 34 2 1 2482 9 27 22
D-E -52.9751 -41.6833 -292.788 -387.4464 117 15 7 11949 2 34 35
D-G 0.0 0.0 -0.0054 -0.0054 2 0 0 4 0 0 0
D-K -9.9632 -53.602 -96.3272 -159.8924 51 8 1 4301 6 28 26
D-L -9.3325 -39.5047 -138.172 -187.0092 52 1 0 4752 4 31 31
E-F -61.1298 -26.1753 -407.416 -494.7211 130 16 11 14987 2 30 34
E-G 0.0 0.0 -0.0019 -0.0019 2 0 0 2 0 0 0
E-L -7.8067 -18.9545 -79.964 -106.7252 41 7 0 3111 1 13 19
E-M -2.1757 -21.556 -144.549 -168.2807 53 2 3 5260 2 29 13
F-G -85.5151 -26.2927 -406.975 -518.7828 130 23 9 15271 4 26 27
F-M -22.9847 -75.8016 -103.044 -201.8303 55 8 2 4072 6 34 22
F-N -21.1289 -23.5085 -97.5252 -142.1626 51 3 2 4315 3 14 10
G-H -32.4464 -81.5057 -181.854 -295.8061 60 5 1 6290 11 14 22
G-N -18.6219 -40.0611 -87.937 -146.6199 48 2 4 3770 2 15 18
G-1 -2.4405 0.0 -8.1345 -10.575 13 3 0 515 0 3 4
H-I -143.6848 -165.3766 -397.682 -706.7434 145 19 14 15685 11 43 35
H-N -32.8332 -38.2116 -93.7704 -164.8152 64 2 2 3638 3 15 5
H-Y 0.0 0.0 -16.4826 -16.4826 9 0 1 663 0 0 1
H-Z -94.2656 -70.3925 -386.924 -551.5821 116 27 5 14777 4 34 39
H-1 0.0 -38.9254 -218.11 -257.0354 92 5 5 9264 1 22 20
I-J -8.0218 -55.3006 -122.679 -186.0014 75 6 4 5952 4 14 11
I-Y -86.3348 -57.8592 -282.428 -426.622 91 22 5 10459 5 21 22
I-Z -37.098 -33.3443 -193.751 -264.1934 73 13 1 7666 3 19 19
J-K -37.1628 -17.9578 -139.137 -194.2576 68 7 4 6009 3 21 20
J-X -41.2562 -5.0995 -108.268 -154.6237 58 29 4 7180 2 22 30
J-Y -34.2664 -45.6349 -253.006 -332.9074 81 11 3 9001 7 22 20
K-L -54.2844 -36.4085 -166.07 -256.7629 79 5 4 5916 4 24 13
K-V 0.0 0.0 -16.105 -16.105 9 0 1 661 0 0 1
K-W -86.8021 -57.9492 -284.192 -428.9434 91 23 5 10512 5 21 22
K-X -32.5011 -44.6395 -254.9 -332.0406 81 16 3 9105 7 22 20
K-3 -7.7288 0.0 -12.8034 -20.5322 16 0 5 522 0 0 0
L-M -51.7986 13.5387 -240.251 -278.5108 91 13 5 9517 9 27 23
L-V -85.3122 -70.4535 -385.896 -541.6617 116 26 5 14715 4 34 39
L-W -33.6577 -32.9221 -195.37 -261.9498 73 14 1 7683 3 19 19
L-3 -21.2726 0.0 -4.9138 -26.1865 8 2 0 253 0 0 0
M-N -13.8174 -22.6835 -145.279 -181.78 65 4 1 6011 2 22 14
M-U 0.0 0.0 -9.9386 -9.9386 12 3 0 505 0 3 4
M-V 0.0 -39.5386 -219.81 -259.3486 92 4 5 9313 1 22 20
M-2 -127.3815 25.8445 -406.573 -508.11 112 19 10 14358 4 29 30
N-1 -126.3138 25.8227 -405.224 -505.7151 113 19 10 14381 4 29 31
N-2 -53.3152 -24.8468 -182.088 -260.2499 54 22 3 6936 4 12 11
O-P -57.4564 -17.3627 -432.473 -507.2921 137 23 7 16189 1 23 22
O-Q 0.0 -11.0843 -19.2505 -30.3348 13 0 1 627 0 2 2
O-R -7.3485 0.0 -2.4738 -9.8224 5 0 0 139 0 2 1
O-S 0.0 0.0 -8.9919 -8.9919 9 2 0 385 0 1 0
O-T -4.5139 0.0 -24.5776 -29.0915 16 1 0 1019 0 0 1
O-U -78.8953 -32.3003 -458.032 -569.2276 133 21 13 16564 3 24 28
O-V -50.1707 -25.0496 -171.72 -246.9402 69 12 3 6506 3 18 18
O-W -20.0467 -7.1157 -116.749 -143.9114 54 2 2 4683 2 16 19
P-Q -51.8235 3.675 -453.806 -501.9545 138 21 6 17646 1 31 36
P-R -8.1612 -18.1637 -26.4309 -52.7557 14 2 0 948 2 8 6
P-S 0.0 -19.2782 -21.9477 -41.2259 14 4 0 797 0 4 2
P-T 0.0 0.0 -22.4818 -22.4818 18 0 0 1006 0 1 1
P-U 0.0 4.6713 -39.9841 -35.3128 17 2 3 1240 0 2 5
P-V 0.0 15.1872 -1.6863 13.5009 10 0 0 114 0 5 4
P-W 0.0 -6.2875 -110.95 -117.2375 49 3 0 4761 0 17 19
P-X -18.5231 -29.2124 -136.07 -183.8054 48 14 3 4733 4 20 24
Q-R -77.8671 -41.0391 -378.96 -497.8662 120 29 9 14305 2 27 29
Q-S 0.0 0.0 -0.0467 -0.0467 3 0 0 18 0 1 0
Q-X -16.8091 -13.7591 -82.0285 -112.5967 43 3 2 3789 2 17 13
Q-Y -35.7038 -38.3318 -51.383 -125.4186 34 2 1 2361 9 27 22
R-S -74.2294 -42.6225 -334.111 -450.9629 120 22 7 12674 2 34 36
R-U 0.0 0.0 -0.0122 -0.0122 2 0 0 7 0 0 0
R-Y -10.4777 -54.4376 -94.3116 -159.2268 51 9 1 4282 6 28 26
R-Z -8.1042 -37.516 -138.718 -184.3383 52 2 0 4796 4 31 31
S-T -70.8533 -26.7268 -417.447 -515.0271 132 19 11 15203 2 30 34
S-U 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 0 0
S-Z -7.2951 -19.7028 -83.9928 -110.9907 43 6 0 3195 2 13 19
S-1 -2.2788 -20.387 -145.22 -167.8858 53 2 3 5278 2 29 13
T-U -78.6712 -26.3942 -409.84 -514.9054 132 21 9 15202 4 26 26
T-1 -23.6785 -75.7628 -101.565 -201.0063 55 8 2 4076 6 33 22
T-2 -17.7172 -22.8618 -96.8538 -137.4328 50 1 2 4249 3 14 10
U-V -30.0672 -76.1359 -179.14 -285.3431 59 6 1 6169 11 14 21
U-2 -15.5852 -37.7322 -86.6072 -139.9247 48 1 4 3720 2 14 16
V-W -146.9458 -166.7473 -399.617 -713.31 144 19 14 15694 12 43 35
V-2 -31.7896 -37.8854 -94.7588 -164.4338 64 2 2 3662 3 15 5
W-X -4.4994 -55.637 -119.428 -179.5645 75 5 4 5863 4 14 11
X-Y -42.1871 -17.9946 -141.275 -201.4567 68 9 4 6033 3 21 20
Y-Z -53.0189 -36.2109 -167.005 -256.2347 79 5 4 5957 4 24 13
Y-4 -7.9591 0.0 -12.6997 -20.6588 15 1 4 519 0 0 0
Z-1 -62.7328 13.3874 -246.494 -295.8393 92 11 5 9657 9 27 23
Z-4 -20.069 0.0 -5.3328 -25.4018 8 1 0 252 0 0 0
1-2 -13.7565 -22.1637 -138.471 -174.3912 65 3 1 5949 2 22 14