3NMU

crystal structure of substrate-bound halfmer box c/d rnp

• Total interactions analyzed: 45
• Total true interactions: 9
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 162
  • Norm. En. per Res.: -3.9152
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-31.9027	-115.5336	-486.823	-634.2593	162	33	17	21075	7	80	93
A-F	-67.0963	-140.449	-462.471	-670.0163	186	30	14	21570	5	85	81
A-G	-8.1769	28.2107	-125.31	-105.2762	63	4	2	5681	1	15	16
A-J	0.0	0.0	-0.001	-0.001	3	0	0	2	0	4	0
B-C	-17.2051	25.9167	-138.121	-129.4094	64	7	2	5791	1	12	15
B-F	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	4	0
B-J	-74.2528	-127.3197	-459.942	-661.5145	179	40	17	21666	7	83	84
C-J	-9.4406	-12.8406	-26.7419	-49.0232	27	2	0	1239	2	27	20
F-G	-14.0361	-21.7647	-19.2174	-55.0183	25	4	0	1124	2	29	18

Interface residues

• A-B: ALA130A, ALA130B, ALA138A, ALA138B, ALA141A, ALA141B, ALA154A, ALA154B, ALA218A, ALA218B, ALA232A, ALA232B, ALA252A, ALA252B, ARG121A, ARG121B, ARG123B, ARG131A, ARG131B, ARG155A, ARG155B, ARG157A, ARG157B, ARG187A, ARG187B, ARG229A, ARG229B, ARG237A, ARG237B, ARG242A, ARG242B, ARG251A, ARG251B, ASN150B, ASP132A, ASP132B, ASP143A, ASP143B, ASP144A, ASP144B, ASP146A, ASP146B, ASP221A, ASP221B, ASP224A, ASP224B, ASP236A, ASP236B, ASP247A, ASP247B, ASP255A, ASP255B, GLN125A, GLN125B, GLN127A, GLN127B, GLN137A, GLN137B, GLN222A, GLN222B, GLN230A, GLN230B, GLN240A, GLN240B, GLU126A, GLU126B, GLU140A, GLU140B, GLU158A, GLU158B, GLU226A, GLU226B, GLU233A, GLU233B, GLU234A, GLU234B, GLU246A, GLU246B, GLY129A, GLY129B, GLY217A, GLY217B, HIS163A, HIS163B, HIS186A, HIS186B, ILE124A, ILE124B, ILE136A, ILE136B, ILE139A, ILE139B, ILE149A, ILE149B, ILE225A, ILE225B, ILE235A, ILE235B, ILE249A, ILE249B, LEU142A, LEU142B, LEU151A, LEU151B, LEU152A, LEU152B, LEU156A, LEU156B, LEU162A, LEU162B, LEU231A, LEU231B, LEU238A, LEU238B, LEU241A, LEU241B, LEU245A, LEU245B, LYS133A, LYS133B, LYS147A, LYS147B, LYS243A, LYS243B, LYS244A, LYS244B, LYS37A, MET122A, MET122B, MET134A, MET134B, MET220A, MET220B, SER128A, SER128B, SER161A, SER161B, SER274A, SER274B, THR223A, THR223B, TRP159A, TRP159B, TRP219A, TRP219B, TYR160A, TYR160B, TYR239A, TYR239B, TYR248A, TYR248B, VAL135A, VAL135B, VAL145A, VAL145B, VAL148A, VAL148B, VAL153B, VAL227A, VAL227B, VAL228A, VAL228B
• A-F: ALA118A, ALA131F, ALA139F, ALA152F, ALA164F, ALA166F, ALA252A, ALA257A, ALA262A, ALA343A, ALA344A, ALA355A, ALA364A, ALA83F, ALA92A, ARG109F, ARG112F, ARG121A, ARG121F, ARG122F, ARG123A, ARG131A, ARG138F, ARG14A, ARG170F, ARG181F, ARG251A, ARG345A, ARG95A, ARG97A, ASN107A, ASN123F, ASN12A, ASN163F, ASN259A, ASN90A, ASN99A, ASP130F, ASP132A, ASP162F, ASP184F, ASP254A, ASP255A, ASP347A, ASP40A, GLN125A, GLN127A, GLN153F, GLN41A, GLU101A, GLU105F, GLU106A, GLU110A, GLU111A, GLU113F, GLU119F, GLU11A, GLU120F, GLU126A, GLU135F, GLU136F, GLU352A, GLU356A, GLU357A, GLU361A, GLU368A, GLU36A, GLU46A, GLU69A, GLU72A, GLU94A, GLU98F, GLY103F, GLY116A, GLY129A, GLY129F, GLY15A, GLY351A, GLY45A, GLY85F, GLY93A, GLY99F, HIS70A, ILE101F, ILE104F, ILE117F, ILE124A, ILE124F, ILE125F, ILE127F, ILE159F, ILE16A, ILE183F, ILE342A, ILE354A, ILE9A, LEU104A, LEU111F, LEU114F, LEU119A, LEU128F, LEU140F, LEU168F, LEU260A, LEU279A, LEU358A, LEU39A, LEU42A, LEU43A, LEU51A, LEU73A, LEU96A, LYS100F, LYS114A, LYS133F, LYS143F, LYS165F, LYS169F, LYS179F, LYS187F, LYS226F, LYS261A, LYS339A, LYS359A, LYS360A, LYS44A, MET122A, MET253A, PHE106F, PHE109A, PHE31A, PHE349A, PHE68A, PHE88A, PRO100A, PRO108F, PRO116F, PRO126F, PRO134F, PRO154F, PRO258A, PRO35A, PRO71A, PRO89A, SER107F, SER10A, SER128A, SER180F, SER182F, SER350A, SER74A, SER76F, SER84F, SER98A, THR120A, THR132F, THR142F, THR155F, THR186F, THR86A, THR86F, TRP108A, TRP97F, TYR102F, TYR112A, TYR113A, TYR137F, TYR167F, TYR17A, TYR203F, TYR348A, TYR353A, VAL110F, VAL115A, VAL115F, VAL117A, VAL118F, VAL13A, VAL141F, VAL144F, VAL151F, VAL185F, VAL256A, VAL346A, VAL77F, VAL95F
• A-G: ALA283A, ALA337A, ALA341A, ALA343A, ALA344A, ALA43G, ALA65G, ARG280A, ARG334A, ARG345A, ARG34G, ARG46G, ASN259A, ASN38G, ASP347A, ASP59G, CYS71G, GLN291A, GLU281A, GLU352A, GLU357A, GLU361A, GLU39G, GLU45G, GLU61G, GLU62G, GLU72G, GLU73G, GLY338A, GLY351A, HIS66G, ILE290A, ILE342A, ILE354A, ILE63G, LEU358A, LEU67G, LEU70G, LYS339A, LYS42G, LYS74G, LYS9G, MET284A, MET285A, PHE349A, PRO286A, PRO60G, PRO68G, PRO69G, SER287A, SER288A, SER350A, SER6G, SER99G, THR289A, THR37G, THR40G, THR41G, TYR348A, TYR7G, VAL346A, VAL44G, VAL64G
• A-J: ARG112J, ASP221A, TRP219A
• B-C: ALA283B, ALA341B, ALA343B, ALA344B, ALA43C, ALA65C, ALA98C, ARG280B, ARG345B, ARG46C, ASN259B, ASN38C, ASP347B, ASP59C, CYS71C, GLN291B, GLU352B, GLU357B, GLU361B, GLU39C, GLU45C, GLU61C, GLU62C, GLU72C, GLU73C, GLY338B, GLY351B, HIS66C, ILE290B, ILE342B, ILE354B, ILE63C, LEU282B, LEU299B, LEU303B, LEU358B, LEU67C, LEU70C, LYS339B, LYS42C, LYS74C, MET284B, MET285B, PHE349B, PRO286B, PRO60C, PRO68C, PRO69C, SER287B, SER288B, SER350B, SER6C, SER99C, THR289B, THR37C, THR40C, THR41C, TYR348B, TYR7C, VAL292B, VAL346B, VAL44C, VAL58C, VAL64C
• B-F: ARG112F, ASP221B
• B-J: ALA118B, ALA131J, ALA139J, ALA152J, ALA164J, ALA166J, ALA252B, ALA257B, ALA262B, ALA343B, ALA344B, ALA355B, ALA364B, ALA83J, ALA92B, ARG109J, ARG112J, ARG121B, ARG121J, ARG122J, ARG123B, ARG131B, ARG138J, ARG14B, ARG170J, ARG181J, ARG251B, ARG367B, ARG95B, ARG97B, ASN107B, ASN123J, ASN12B, ASN163J, ASN259B, ASN90B, ASN99B, ASP130J, ASP162J, ASP184J, ASP254B, ASP255B, ASP347B, ASP40B, GLN125B, GLN127B, GLN153J, GLN156J, GLN41B, GLU101B, GLU105J, GLU110B, GLU111B, GLU113J, GLU119J, GLU11B, GLU120J, GLU126B, GLU135J, GLU136J, GLU352B, GLU356B, GLU357B, GLU361B, GLU36B, GLU46B, GLU69B, GLU72B, GLU87B, GLU94B, GLY103J, GLY116B, GLY129B, GLY129J, GLY15B, GLY351B, GLY45B, GLY81J, GLY93B, GLY99J, HIS70B, ILE101J, ILE104J, ILE117J, ILE124B, ILE124J, ILE125J, ILE127J, ILE159J, ILE16B, ILE183J, ILE354B, ILE9B, LEU104B, LEU111J, LEU114J, LEU119B, LEU128J, LEU140J, LEU168J, LEU279B, LEU358B, LEU39B, LEU42B, LEU43B, LEU51B, LEU73B, LEU78J, LEU96B, LYS100J, LYS114B, LYS133J, LYS143J, LYS165J, LYS169J, LYS179J, LYS226J, LYS261B, LYS339B, LYS359B, LYS360B, LYS44B, LYS57J, MET122B, MET253B, PHE106J, PHE109B, PHE31B, PHE349B, PHE68B, PHE88B, PRO100B, PRO108J, PRO116J, PRO126J, PRO134J, PRO154J, PRO258B, PRO35B, PRO71B, PRO89B, SER107J, SER10B, SER128B, SER182J, SER350B, SER76J, SER84J, SER98B, THR120B, THR132J, THR142J, THR155J, THR186J, THR86B, TRP108B, TRP97J, TYR102J, TYR112B, TYR113B, TYR137J, TYR167J, TYR17B, TYR203J, TYR348B, TYR353B, VAL110J, VAL115B, VAL115J, VAL117B, VAL118J, VAL13B, VAL141J, VAL144J, VAL151J, VAL185J, VAL256B, VAL346B, VAL77J
• C-J: ALA152J, ARG181J, ARG55J, ASN52J, ASP218J, ASP57C, ASP59C, GLU216J, GLU38J, GLU61C, HIS219J, HIS54J, LYS179J, LYS217J, LYS4C, LYS84C, LYS85C, PRO53J, PRO5C, PRO60C, SER182J, SER56J, SER6C, SER83C, TYR215J, TYR36J, VAL58C
• F-G: ARG181F, ARG55F, ASN52F, ASP218F, ASP57G, ASP59G, GLU216F, GLU38F, GLU61G, HIS219F, HIS54F, ILE63G, LYS179F, LYS217F, LYS4G, LYS84G, PRO53F, PRO5G, PRO60G, SER56F, SER6G, TYR215F, TYR36F, VAL185F, VAL58G