3NM9

hmgd(m13a)-dna complex

• Total interactions analyzed: 120
• Total true interactions: 7
• Strongest Interaction:
  • Chains: D-M
  • Int. Res.: 36
  • Norm. En. per Res.: -1.8969
• Hub Node: D(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-M	0.0	0.0	-0.0036	-0.0036	2	0	0	2	0	2	0
D-G	0.0	0.0	-0.0458	-0.0458	4	0	0	29	0	2	2
D-J	0.0	-3.5084	-1.5711	-5.0794	11	0	0	203	0	3	7
D-M	-10.7911	7.156	-64.6522	-68.2873	36	5	0	3026	0	24	24
D-P	-7.8486	54.562	-49.9201	-3.2067	43	0	3	2584	1	47	46
G-J	-15.1079	61.1485	-52.9922	-6.9516	44	4	1	2614	0	43	43
J-P	0.0	0.0	-0.4357	-0.4357	4	0	0	104	0	2	3

Interface residues

• A-M: GLU71M, LYS4A
• D-G: ARG7G, LYS31D, LYS4G, THR33D
• D-J: ARG7D, ARG7J, GLU71D, GLU71J, LYS4D, LYS4J, PHE70D, PHE70J, TYR63J, VAL67D, VAL67J
• D-M: ALA11M, ALA13M, ALA54M, ALA56M, ALA57M, ALA59M, ALA66M, ARG25D, ARG38D, ARG65M, ARG7M, ASN17M, ASN27D, ASP61M, ASP62M, GLU21D, GLU26D, GLY29D, ILE23D, ILE30D, LEU14M, LEU9M, LYS24D, LYS31D, LYS55M, LYS58M, LYS60M, LYS6M, PRO28D, PRO5M, PRO8M, SER10M, SER18M, SER22D, TRP52M, TYR63M
• D-P: ALA11D, ALA45D, ALA45P, ALA54D, ALA54P, ALA56D, ALA56P, ALA57D, ALA57P, ALA59P, ARG44D, ARG44P, ARG65D, ARG65P, ASP48D, ASP48P, ASP61D, ASP61P, ASP62D, ASP62P, ASP64D, ASP64P, GLU51P, GLU53D, GLU53P, LYS47D, LYS47P, LYS49D, LYS49P, LYS55D, LYS55P, LYS58D, LYS58P, LYS60D, LYS60P, LYS68D, MET46D, MET46P, SER50D, SER50P, TRP43D, TRP52D, TRP52P
• G-J: ALA11G, ALA11J, ALA45G, ALA45J, ALA54G, ALA54J, ALA56G, ALA56J, ALA57G, ALA57J, ALA59J, ARG44G, ARG44J, ARG65G, ARG65J, ASP48G, ASP48J, ASP61G, ASP61J, ASP62G, ASP62J, ASP64G, ASP64J, GLU51J, GLU53G, GLU53J, LEU42J, LYS47G, LYS47J, LYS49G, LYS49J, LYS58G, LYS58J, LYS60G, LYS60J, LYS68G, LYS68J, MET46G, MET46J, SER50G, SER50J, TRP43G, TRP43J, TRP52J
• J-P: ARG7P, LYS31J, LYS4P, THR33J