3NH2

crystal structure of rnase t in complex with a stem dna with a 3' overhang

• Total interactions analyzed: 28
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 128
  • Norm. En. per Res.: -2.6732
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-44.2744	21.1719	-319.072	-342.1746	128	21	18	14791	0	11	15
A-F	-7.6023	-7.0891	-6.9225	-21.6139	24	1	0	677	0	8	4
B-E	0.0	-6.7824	-35.7074	-42.4898	39	2	0	2128	0	10	9
B-F	0.0	0.0	-1.3615	-1.3615	15	0	0	235	0	2	5
E-F	-45.5742	17.4916	-318.109	-346.1916	130	15	17	14396	0	11	16

Interface residues

• A-B: ALA119A, ALA119B, ALA122A, ALA122B, ALA147A, ALA147B, ALA152A, ALA152B, ALA153A, ALA153B, ALA155A, ALA155B, ALA158A, ALA158B, ALA167A, ALA167B, ALA171A, ALA171B, ALA211A, ALA211B, ALA212A, ALA212B, ARG114A, ARG114B, ARG13A, ARG13B, ARG15A, ARG15B, ARG200A, ARG200B, ARG203A, ARG203B, ASN121A, ASN121B, ASN123A, ASN123B, ASN199A, ASN199B, ASN30A, ASN30B, ASP12A, ASP12B, ASP150A, ASP150B, CYS195A, CYS195B, GLN161A, GLN161B, GLU196A, GLU196B, GLY156A, GLY156B, GLY160A, GLY160B, GLY16A, GLY16B, GLY205A, GLY205B, GLY206A, GLY206B, HIS120A, HIS120B, HIS126A, HIS126B, HIS144A, HIS144B, ILE116A, ILE116B, ILE197A, ILE197B, LEU154A, LEU154B, LEU157A, LEU157B, LEU159A, LEU159B, LEU164B, LEU204A, LEU204B, LEU209A, LEU209B, LEU52A, LEU52B, LYS166A, LYS166B, LYS202A, LYS202B, LYS32A, LYS32B, MET117A, MET117B, PHE124A, PHE124B, PHE146A, PHE146B, PHE149A, PHE149B, PHE14A, PHE14B, PHE17A, PHE17B, PHE194A, PHE194B, PHE29A, PHE29B, PRO208A, SER127A, SER127B, THR148A, THR148B, THR151A, THR151B, THR162A, THR162B, THR170A, THR170B, THR33A, THR33B, TRP201A, TRP201B, TRP207A, TRP207B, VAL118A, VAL118B, VAL163A, VAL163B, VAL198A, VAL198B
• A-F: ALA109F, ALA76A, ARG140F, ARG15F, ASN113F, ASP12F, ASP176A, CYS112F, CYS11F, GLN169A, GLU73A, GLY111F, GLY16F, ILE107F, LYS105F, LYS108F, LYS139F, LYS166A, PHE175A, PHE77A, PRO72A, SER110F, SER165A, VAL163A
• B-E: ALA109B, ALA180E, ALA74E, ALA76E, ARG104B, ARG114B, ARG140B, ASN113B, ASN78E, ASP12B, ASP176E, CYS112B, CYS11B, GLN161E, GLN169E, GLN179E, GLU73E, GLY106B, GLY111B, GLY16B, GLY79E, HIS181E, HIS97B, ILE107B, LEU75E, LYS101B, LYS105B, LYS108B, LYS139B, LYS166E, PHE175E, PHE77E, PRO72E, SER110B, SER165E, SER177E, THR178E, TYR93B, VAL163E
• B-F: ARG114B, ARG114F, ARG15B, ARG15F, ASN113B, ASN113F, ASP12B, CYS112B, CYS112F, CYS11B, CYS11F, GLY111B, GLY111F, GLY16B, GLY16F
• E-F: ALA119E, ALA119F, ALA122E, ALA122F, ALA147E, ALA147F, ALA152E, ALA152F, ALA153E, ALA153F, ALA155E, ALA155F, ALA158E, ALA158F, ALA167E, ALA167F, ALA171E, ALA171F, ALA211E, ALA211F, ALA212E, ALA212F, ARG114E, ARG114F, ARG13E, ARG13F, ARG15E, ARG15F, ARG200E, ARG200F, ARG203E, ARG203F, ASN121E, ASN121F, ASN123E, ASN123F, ASN199E, ASN199F, ASN30E, ASN30F, ASP12E, ASP12F, ASP150E, ASP150F, CYS195E, CYS195F, GLN161E, GLN161F, GLU196E, GLU196F, GLU213E, GLU213F, GLY156E, GLY156F, GLY160E, GLY160F, GLY16E, GLY16F, GLY172E, GLY205E, GLY205F, GLY206E, GLY206F, HIS120E, HIS120F, HIS126E, HIS126F, HIS144E, HIS144F, ILE116E, ILE116F, ILE197E, ILE197F, LEU154E, LEU154F, LEU157E, LEU157F, LEU159E, LEU159F, LEU204E, LEU204F, LEU209E, LEU209F, LEU52E, LEU52F, LYS166E, LYS166F, LYS202E, LYS202F, LYS32E, LYS32F, MET117E, MET117F, PHE124E, PHE124F, PHE146E, PHE146F, PHE149E, PHE149F, PHE14E, PHE14F, PHE17E, PHE17F, PHE194E, PHE194F, PHE29E, PHE29F, PRO208E, PRO208F, SER127E, SER127F, SER210F, THR148E, THR148F, THR151E, THR151F, THR162E, THR162F, THR170E, THR170F, TRP201E, TRP201F, TRP207E, TRP207F, VAL118E, VAL118F, VAL163E, VAL163F, VAL198E, VAL198F