3NH1

crystal structure of rnase t in complex with a preferred ssdna (tagg) with two mg in the active site

• Total interactions analyzed: 28
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-D
  • Int. Res.: 76
  • Norm. En. per Res.: -2.9338
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-29.5457	12.6458	-306.933	-323.8329	129	14	17	14648	0	8	19
A-D	-30.1563	-74.3754	-118.438	-222.9696	76	12	0	5235	6	49	42
C-D	-18.332	12.1574	-334.417	-340.5916	127	9	15	14983	0	10	16

Interface residues

• A-B: ALA122A, ALA122B, ALA147A, ALA147B, ALA152A, ALA152B, ALA153A, ALA153B, ALA155A, ALA155B, ALA158A, ALA158B, ALA167A, ALA167B, ALA171A, ALA171B, ALA211A, ALA212A, ALA212B, ARG13A, ARG13B, ARG15A, ARG15B, ARG200A, ARG200B, ARG203A, ARG203B, ASN121A, ASN121B, ASN123A, ASN123B, ASN199A, ASN199B, ASN30A, ASN30B, ASP12A, ASP12B, ASP150A, ASP150B, CYS195A, CYS195B, GLN161A, GLN161B, GLN169A, GLN169B, GLU196A, GLU196B, GLY156A, GLY156B, GLY160A, GLY160B, GLY16A, GLY16B, GLY172A, GLY172B, GLY205A, GLY205B, GLY206A, GLY206B, HIS120A, HIS120B, HIS126A, HIS126B, HIS144A, HIS144B, ILE116A, ILE116B, ILE197A, ILE197B, LEU154A, LEU154B, LEU157A, LEU157B, LEU159A, LEU159B, LEU164A, LEU164B, LEU204A, LEU204B, LEU209A, LEU209B, LEU52A, LEU52B, LYS166A, LYS166B, LYS202A, LYS202B, LYS32A, LYS32B, MET117A, MET117B, PHE124A, PHE124B, PHE146A, PHE146B, PHE149A, PHE149B, PHE14A, PHE14B, PHE17A, PHE17B, PHE194A, PHE194B, PHE29A, PHE29B, PRO208A, PRO208B, SER127A, SER127B, SER210A, SER210B, THR148A, THR148B, THR151A, THR151B, THR162A, THR162B, THR170A, THR170B, TRP201A, TRP201B, TRP207A, TRP207B, VAL118A, VAL118B, VAL163A, VAL163B, VAL198A, VAL198B
• A-D: ALA109D, ALA136D, ALA180A, ALA183A, ALA40A, ALA41D, ALA76A, ALA89A, ALA89D, ALA95D, ARG104D, ARG140D, ARG87A, ASN141D, ASN78A, ASN83A, ASP174A, ASP176A, ASP186A, ASP55A, ASP55D, ASP81A, ASP84A, ASP86A, ASP86D, GLN179A, GLU25A, GLU38A, GLU94D, GLU98D, GLY106D, GLY79A, GLY88A, GLY88D, HIS181A, HIS59A, HIS59D, HIS61A, HIS97D, ILE107D, ILE80A, ILE99D, LEU138D, LEU184A, LEU58A, LEU58D, LEU75A, LYS101D, LYS105D, LYS139D, LYS45A, LYS45D, MET53A, PHE100D, PHE60A, PHE60D, PHE77A, PRO142D, PRO54A, PRO85A, PRO85D, SER137D, SER177A, SER182A, THR178A, THR43D, THR56A, THR56D, THR57A, THR57D, TYR185A, TYR18D, TYR93D, VAL102D, VAL103D, VAL90D
• C-D: ALA119D, ALA122C, ALA122D, ALA147C, ALA147D, ALA152C, ALA152D, ALA153C, ALA153D, ALA155C, ALA155D, ALA158C, ALA158D, ALA167C, ALA167D, ALA171C, ALA171D, ALA211C, ALA211D, ALA212C, ALA212D, ARG13C, ARG13D, ARG15C, ARG15D, ARG200C, ARG200D, ARG203C, ARG203D, ASN121C, ASN121D, ASN123C, ASN123D, ASN199C, ASN199D, ASN30C, ASN30D, ASP12C, ASP12D, ASP150C, ASP150D, CYS195C, CYS195D, GLN161C, GLN161D, GLN169D, GLU196C, GLU196D, GLY156C, GLY156D, GLY160C, GLY160D, GLY16C, GLY16D, GLY172D, GLY205C, GLY205D, GLY206C, GLY206D, HIS120C, HIS120D, HIS126C, HIS126D, HIS144C, HIS144D, ILE116C, ILE116D, ILE197C, ILE197D, LEU154C, LEU154D, LEU157C, LEU157D, LEU159C, LEU159D, LEU164C, LEU164D, LEU204C, LEU204D, LEU209C, LEU209D, LEU52C, LEU52D, LYS166C, LYS166D, LYS202C, LYS202D, LYS32C, LYS32D, MET117C, MET117D, PHE124C, PHE124D, PHE146C, PHE146D, PHE149C, PHE149D, PHE14C, PHE14D, PHE17C, PHE17D, PHE194C, PHE194D, PHE29C, PHE29D, PRO208C, PRO208D, SER127C, SER127D, THR148C, THR148D, THR151C, THR151D, THR162C, THR162D, THR170C, THR170D, TRP201C, TRP201D, TRP207C, TRP207D, VAL118C, VAL118D, VAL163C, VAL163D, VAL198C, VAL198D