3NGB
crystal structure of broadly and potently neutralizing antibody vrc01 in complex with hiv-1 gp120
Total interactions analyzed 66
Total true interactions 26
Strongest Interaction Chains I-J
Int. Res. 102
Norm. En. per Res. -2.6714
Hub Node A(6)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
G-H -55.1101 -11.526 -188.25 -254.8861 100 11 1 8308 5 20 15
G-L -9.6238 0.0 -55.7277 -65.3515 30 2 0 1974 0 2 2
G-E -12.6791 0.0 -88.3934 -101.0725 67 6 1 4493 0 6 5
G-F 0.0 0.0 -0.2948 -0.2948 5 0 0 50 0 0 0
H-L -7.8144 -24.0374 376.098 344.2463 182 19 9 17545 2 26 20
H-A -10.6492 3.268 -28.3371 -35.7183 23 2 0 1867 0 2 2
H-D -11.6793 0.797 -126.375 -137.2573 80 7 2 6306 0 7 8
H-E 0.0 -8.0709 -60.0925 -68.1634 48 4 0 2966 0 12 10
L-A 0.0 0.0 -0.9873 -0.9873 19 0 0 163 0 1 2
L-D 0.0 0.0 -0.2486 -0.2486 5 0 0 46 0 0 0
A-B -63.6957 -12.903 -195.384 -271.9827 103 11 1 8504 5 18 13
A-C -16.277 0.0 -53.1196 -69.3966 32 4 0 1996 0 2 2
A-D 0.0 0.0 -0.0939 -0.0939 6 0 0 28 0 0 0
A-E 0.0 0.0 -0.3211 -0.3211 6 0 0 74 0 0 0
A-J -18.7559 0.6607 -107.605 -125.7002 74 7 2 5129 0 7 6
A-K 0.0 0.0 -0.1946 -0.1946 5 0 0 36 0 0 0
B-C -46.6709 -25.8188 256.16 183.6703 194 29 9 19249 2 29 23
B-I -10.4598 1.8527 -111.978 -120.5851 77 8 2 5986 0 8 9
B-J 0.0 0.9025 -72.0659 -71.1633 46 2 0 3124 0 13 10
C-I 0.0 0.0 -0.1693 -0.1693 5 0 0 36 0 0 0
D-E -49.3899 -10.8299 -197.058 -257.2778 105 12 2 8284 5 19 17
D-F -5.3617 0.0 -37.7574 -43.1191 25 3 0 1495 0 2 2
E-F -26.8313 -36.8056 293.007 229.3702 190 24 9 18825 3 23 21
I-J -62.9329 -13.9157 -195.639 -272.4875 102 15 2 8411 4 17 16
I-K -4.3182 0.0 -42.9464 -47.2646 31 6 0 1687 0 2 2
J-K -47.1076 -42.3459 244.203 154.7495 197 32 8 20137 3 27 25