3NFG
crystal structure of dimerization module of rna polymerase i subcomplex a49/a34.5
Total interactions analyzed 120
Total true interactions 53
Strongest Interaction Chains K-M
Int. Res. 165
Norm. En. per Res. -7.4575
Hub Node A(8)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -202.7391 -59.3514 -513.753 -775.8435 119 20 19 18762 5 32 25
A-C 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 1 0
A-D 0.0 1.9111 -8.9818 -7.0706 23 1 0 409 0 3 9
A-E 0.0 0.0 -0.0537 -0.0537 2 0 0 24 0 0 1
A-F 0.0 0.0 -4.1068 -4.1068 12 1 0 197 0 2 3
A-I 0.0 -3.3977 -0.3651 -3.7628 2 0 0 35 0 1 1
A-O -363.4765 -40.4939 -786.848 -1190.8184 165 40 44 29715 2 64 52
A-P -108.8779 -46.2218 -310.154 -465.2537 115 12 8 11923 4 33 21
B-C 0.0 0.0 -0.0102 -0.0102 3 0 0 13 0 1 4
B-D -50.7344 -11.3887 -190.897 -253.0201 67 14 0 7168 2 26 16
B-F -12.0291 -2.4183 -26.9478 -41.3953 23 3 0 1624 0 7 4
B-I 0.0 0.0 -0.0497 -0.0497 3 0 0 10 0 1 0
B-O -110.4575 -55.8249 -342.981 -509.2634 115 22 8 12839 5 37 21
B-P 0.0 -17.0206 -23.2037 -40.2243 25 3 0 1064 1 6 6
C-D -182.5647 -42.0661 -509.494 -734.1248 115 23 19 18451 1 32 27
C-E 0.0 -3.1094 -21.8287 -24.9381 17 3 0 1357 0 11 3
C-F -8.0855 0.0 -4.5523 -12.6379 6 1 0 133 0 0 3
C-G 0.0 0.0 -0.5629 -0.5629 4 0 0 38 0 1 2
C-H 0.0 0.0 -14.8282 -14.8282 15 0 0 701 0 1 1
C-I -341.0176 -97.6254 -771.043 -1209.686 164 51 44 29283 3 62 50
C-J -142.336 -42.5001 -325.786 -510.6221 116 18 8 12255 3 33 23
D-E 0.0 0.0 -3.9586 -3.9586 6 0 0 144 0 0 4
D-F -12.1368 2.0014 -73.6854 -83.8208 54 5 5 4051 0 7 6
D-G 0.0 0.0 -15.1472 -15.1472 14 0 0 682 0 2 1
D-I -131.1949 -32.4599 -323.444 -487.0988 116 15 8 12446 2 31 20
D-J -4.1864 -20.0118 -25.1178 -49.316 26 2 0 1257 2 6 5
D-O 0.0 5.835 -1.6098 4.2251 15 0 0 205 0 6 6
E-F -188.9563 -44.2755 -500.505 -733.7368 114 25 19 18343 3 35 25
E-G -361.6313 -24.7565 -777.841 -1164.2288 167 55 44 29917 4 70 51
E-H -119.5277 -37.1216 -318.878 -475.5273 112 12 8 12139 2 32 23
E-I 0.0 0.0 -0.0976 -0.0976 4 0 0 17 0 1 2
E-J 0.0 0.0 -15.3381 -15.3381 14 2 0 672 0 1 1
F-G -101.7222 -27.0019 -311.085 -439.8091 115 11 8 12068 2 32 22
F-H -14.3611 -29.2324 -15.2134 -58.8069 25 3 0 869 4 6 4
F-I 0.0 0.0 -12.1503 -12.1503 16 1 0 683 0 2 1
F-O 0.0 3.8296 -10.2002 -6.3706 7 0 0 349 0 1 3
F-P 0.0 0.0 -5.4366 -5.4366 13 0 0 387 0 3 0
G-H -179.7852 -21.8204 -469.383 -670.9886 112 19 20 17566 0 31 24
G-I 0.0 1.1439 -2.8867 -1.7429 10 0 0 488 0 10 5
G-J 0.0 0.0 -5.1939 -5.1939 10 0 0 195 0 1 3
H-I -3.7099 9.2367 -4.6133 0.9136 9 0 0 153 0 1 3
H-J 0.0 3.2821 -67.1941 -63.912 50 1 4 3801 0 8 5
I-J -198.4108 -56.731 -469.844 -724.9858 111 23 19 17719 5 32 24
I-O 0.0 0.0 -0.0983 -0.0983 4 0 0 52 0 1 1
J-K 0.0 0.0 -0.0069 -0.0069 2 0 0 6 0 0 1
K-L -198.3018 -32.3329 -487.999 -718.6337 114 22 19 17817 4 31 23
K-M -358.838 -55.2201 -816.426 -1230.484 165 50 43 29722 6 65 52
K-N -117.8568 -28.7736 -323.574 -470.2044 115 10 8 12345 1 30 20
L-M -117.9266 -27.5323 -318.636 -464.0949 110 12 9 12191 1 28 19
L-N 0.0 -21.4959 -18.0426 -39.5385 22 0 0 832 2 6 3
M-N -195.529 -46.6068 -475.489 -717.6248 114 22 19 18006 2 31 23
N-P 0.0 0.0 -0.0695 -0.0695 3 0 0 28 0 2 5
O-P -169.5 -33.6071 -442.805 -645.912 110 22 19 17065 2 33 26