3NDH

restriction endonuclease in complex with substrate dna

• Total interactions analyzed: 6
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 225
  • Norm. En. per Res.: -2.9447
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-134.9262	-140.1109	-387.517	-662.5541	225	56	12	29602	15	80	53
A-D	0.0	0.0	2767.57	2767.57	24	238	0	5309	0	0	0
B-D	0.0	0.0	10007.7	10007.7	17	300	0	4534	0	0	0

Interface residues

• A-B: ALA111A, ALA111B, ALA114A, ALA114B, ALA205A, ALA205B, ALA35A, ALA35B, ALA42A, ALA42B, ARG115B, ARG124A, ARG171A, ARG171B, ARG208A, ARG208B, ARG26A, ARG26B, ARG27A, ARG27B, ARG41A, ARG41B, ARG53A, ARG53B, ARG55A, ARG55B, ASN169A, ASN169B, ASN204A, ASN204B, ASP110A, ASP110B, ASP211A, ASP211B, ASP22A, ASP22B, ASP73A, ASP73B, ASP82A, ASP82B, CB9.83770-5.70375, GLN116A, GLN116B, GLN166A, GLN166B, GLN25A, GLN25B, GLN33A, GLN33B, GLU0A, GLU119A, GLU215A, GLU215B, GLU36A, GLU36B, GLU38A, GLU38B, GLU48A, GLU48B, GLU54A, GLU54B, GLU67A, GLU67B, GLU71A, GLU71B, GLU78A, GLU78B, GLU80A, GLU80B, GLY167A, GLY167B, GLY172A, GLY172B, GLY216A, GLY216B, GLY43A, GLY43B, GLY46A, GLY46B, GLY66A, GLY66B, HIS-1A, HIS-2A, HIS-3A, HIS-4A, HIS-4A5, HIS122A, HIS1B, ILE106A, ILE106B, ILE161A, ILE175A, ILE194A, ILE194B, ILE20A, ILE20B, ILE21A, ILE21B, ILE56A, ILE56B, ILE57A, ILE57B, ILE62A, ILE62B, ILE76A, ILE76B, ILE81A, ILE81B, ILE90A, ILE90B, ILE92A, ILE92B, LEU105A, LEU118A, LEU14B, LEU19A, LEU212A, LEU212B, LEU28A, LEU28B, LEU34A, LEU34B, LEU37A, LEU37B, LEU52A, LEU52B, LEU60A, LEU60B, LEU61A, LEU61B, LEU74A, LEU74B, LYS113A, LYS113B, LYS157A, LYS165A, LYS165B, LYS207A, LYS207B, LYS23A, LYS23B, LYS44A, LYS44B, LYS64A, LYS64B, MET31A, MET31B, MET47A, MET47B, PHE117A, PHE117B, PHE152A, PHE1A, PHE206A, PHE206B, PHE32A, PHE32B, PRO123A, PRO164A, PRO164B, PRO170A, PRO170B, PRO29A, PRO29B, PRO75A, PRO75B, PRO79A, PRO79B, SER214A, SER214B, SER39A, SER39B, SER40A, SER40B, SER51A, SER51B, SER58A, SER58B, SER59A, SER59B, SER91A, SER91B, THR108A, THR108B, THR112A, THR112B, THR120A, THR168A, THR168B, THR72A, THR72B, THR77A, THR77B, TRP107A, TRP107B, TRP121A, TRP209A, TRP209B, TRP213A, TRP213B, TYR160A, TYR203A, TYR203B, TYR2B, TYR30A, TYR30B, TYR63A, TYR63B, VAL109A, VAL109B, VAL140A, VAL140B, VAL173A, VAL210A, VAL210B, VAL24A, VAL24B, VAL45A, VAL45B, VAL49A, VAL49B, VAL70A, VAL70B, VAL83A, VAL83B
• A-D: ALA35A, ARG53A, ARG55A, B0D0D, GLU38A, GLU48A, GLU54A, GLY50A, ILE56A, ILE57A, ILE62A, ILE76A, ILE92A, LEU34A, LEU52A, LEU60A, MET31A, PHE32A, SER39A, SER51A, SER58A, SER59A, THR72A, VAL49A
• B-D: ALA205B, ARG208B, ASN204B, ASP211B, B0D0D, GLU38B, GLU48B, LEU212B, LEU52B, LYS207B, PHE206B, SER39B, SER40B, TRP209B, TRP213B, TYR203B, VAL210B