3MK3
crystal structure of lumazine synthase from salmonella typhimurium lt2
Total interactions analyzed 1770
Total true interactions 150
Strongest Interaction Chains d-j
Int. Res. 48
Norm. En. per Res. -4.0924
Hub Node A(9)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -48.8627 19.3806 -297.03 -326.5121 128 15 12 12936 1 15 13
A-E -44.9862 10.8453 -290.627 -324.7679 129 23 12 12860 1 15 13
A-N -13.0244 25.6782 -122.486 -109.8322 58 4 3 5068 2 6 14
A-v -47.4465 -75.1553 12 ALA6A, ALA6v, ARG40A, ARG40v, ASN7A, ASN7v, ASP36A, ASP36v, GLU146A, GLU146v, LYS5A, LYS5v
A-w -12.7988 27.2731 10 ARG21w, ARG40A, ASP28A, ASP28w, ASP32A, ASP36A, GLU123A, GLU123w, GLY130A, PHE25w
B-C -43.8164 11.3704 -290.411 -322.857 128 18 12 12665 1 15 14
B-U -37.784 -71.2303 -79.9073 -188.9216 53 10 3 3838 6 12 10
B-V -14.5498 23.6388 -108.245 -99.156 57 5 3 4769 2 6 14
B-v -12.4311 25.5023 10 ARG21B, ARG40v, ASP28B, ASP28v, ASP32v, ASP36v, GLU123B, GLU123v, GLY130v, PHE25B
C-D -39.6951 12.7329 -276.455 -303.4173 126 14 11 12483 1 15 13
C-R -48.4179 -72.5635 -80.2414 -201.2228 54 12 3 3958 6 12 11
C-S -14.5612 23.4289 -110.294 -101.4262 58 4 3 4743 2 6 14
C-U -5.8289 23.5979 -109.654 -91.885 57 5 3 4762 2 6 14
D-E -49.5182 19.0175 -294.955 -325.4558 130 22 12 13007 1 15 13
D-F -13.5644 24.4826 -116.181 -105.2628 58 6 3 4925 2 6 14
D-J -44.8263 -72.1556 -79.1075 -196.0893 56 10 3 3947 6 12 12
D-R -14.0961 23.8164 -114.74 -105.0196 56 5 3 4872 2 6 14
E-J -12.9209 25.7361 -111.029 -98.2139 56 5 3 4748 2 6 14
E-N -45.6337 -72.8872 -82.3633 -200.8842 56 13 3 3993 6 12 11
E-O -14.696 27.2216 -123.714 -111.1884 57 5 3 4929 2 6 15
F-G -36.5735 18.3761 -295.353 -313.5503 127 15 13 12683 1 15 13
F-J -37.7876 14.5234 -290.407 -313.6712 127 20 12 12731 1 15 13
F-Q -48.8996 -74.7738 -81.7525 -205.4258 55 12 3 3955 6 12 10
F-R -5.1731 24.7062 -107.49 -87.9569 57 5 3 4749 2 6 14
G-H -45.9542 12.3937 -284.666 -318.2265 127 24 12 12668 1 15 13
G-Q -13.1317 24.9972 -109.254 -97.3885 57 5 3 4764 2 6 14
G-f -49.028 -72.3521 -73.6862 -195.0663 51 12 3 3875 6 12 11
G-g -15.4557 27.5052 -124.111 -112.0615 58 9 3 4997 2 6 15
H-I -34.4618 19.7522 -303.406 -318.1156 130 15 13 12886 1 15 13
H-c -39.8894 -69.8259 -74.2465 -183.9617 49 7 3 3712 6 12 10
H-d -7.3899 26.5015 -112.045 -92.9334 57 5 3 4775 2 6 14
H-f -12.3749 27.7244 -122.168 -106.8184 57 9 3 5137 2 6 14
I-J -43.2579 11.881 -284.552 -315.9289 126 19 12 12506 1 15 13
I-K -12.7425 26.2507 -112.496 -98.9878 56 3 3 4710 2 6 15
I-O -46.5927 -73.6076 -83.1352 -203.3355 55 12 3 3954 6 12 12
I-c -9.0531 26.4787 -109.911 -92.4855 56 6 3 4751 2 6 14
J-O -6.6019 25.7407 -111.052 -91.9132 58 9 3 4974 2 6 14
K-L -46.0078 17.8593 -300.876 -329.0245 129 17 13 12878 1 15 12
K-O -45.9018 17.9506 -295.075 -323.0262 129 22 12 13065 1 15 13
K-b -52.0842 -78.8731 -88.5473 -219.5046 55 13 3 4141 6 12 14
K-c -12.1827 25.1786 -116.52 -103.5241 56 8 3 4934 2 6 14
L-M -57.802 20.8025 -305.097 -342.0966 128 22 12 13118 1 15 14
L-b -6.467 24.6582 -105.238 -87.0468 57 8 3 4694 2 6 14
L-k -49.5322 -72.3166 12 ALA6L, ALA6k, ARG40L, ARG40k, ASN7L, ASN7k, ASP36L, ASP36k, GLU146L, GLU146k, LYS5L, LYS5k
L-l -10.2286 26.8878 10 ARG21l, ARG40L, ASP28L, ASP28l, ASP32L, ASP36L, GLU123L, GLU123l, GLY130L, PHE25l
M-N -40.646 19.4471 -282.059 -303.2578 128 17 12 12613 1 15 13
M-k -13.1144 24.6316 10 ARG21M, ARG40k, ASP28M, ASP28k, ASP32k, ASP36k, GLU123M, GLU123k, GLY130k, PHE25M
M-w -48.2669 -74.7102 12 ALA6M, ALA6w, ARG40M, ARG40w, ASN7M, ASN7w, ASP36M, ASP36w, GLU146M, GLU146w, LYS5M, LYS5w
M-x -16.2886 25.8326 10 ARG21x, ARG40M, ASP28M, ASP28x, ASP32M, ASP36M, GLU123M, GLU123x, GLY130M, PHE25x
N-O -44.3933 19.8311 -284.903 -309.4652 126 16 12 12500 1 15 13
N-w -14.9171 28.6322 10 ARG21N, ARG40w, ASP28N, ASP28w, ASP32w, ASP36w, GLU123N, GLU123w, GLY130w, PHE25N
P-Q -44.2152 12.7165 -282.476 -313.9746 126 19 12 12570 1 15 13
P-T -43.7258 17.8875 -308.973 -334.8114 127 20 13 13079 1 15 14
P-3 -14.3186 25.879 -117.503 -105.9426 58 9 3 5125 2 6 15
P-g -41.0521 -71.4982 -78.3615 -190.9118 53 11 3 3878 6 12 12
P-h -14.4035 25.032 -103.356 -92.7275 55 2 3 4484 2 6 14
Q-R -46.7064 19.1092 -304.756 -332.3533 130 18 13 13126 1 15 13
Q-g -5.965 24.2402 -101.929 -83.6539 57 8 2 4745 2 6 14
R-S -44.5144 12.8235 -287.724 -319.4148 128 20 12 12678 1 15 13
S-T -51.0184 21.6763 -289.967 -319.3091 129 20 12 12918 1 15 13
S-U -12.6285 24.3186 -106.133 -94.4428 57 4 3 4660 2 6 14
S-Y -41.1819 -68.8686 -82.3276 -192.3781 53 10 3 3855 6 12 11
T-Y -7.0871 22.1592 -103.732 -88.6599 58 6 3 4650 2 6 14
T-3 -49.4702 -77.0714 -80.7508 -207.2924 56 15 3 4121 6 12 13
T-4 -7.1647 21.9111 -104.289 -89.5426 57 7 3 4666 2 6 14
U-V -42.7752 20.4659 -309.246 -331.5553 130 23 13 13254 1 15 14
U-Y -49.7546 13.1109 -301.001 -337.6447 129 29 12 13163 1 16 14
V-W -42.1576 12.7418 -275.355 -304.7708 129 27 12 12712 1 15 13
V-u -40.8901 -74.3926 12 ALA6V, ALA6u, ARG40V, ARG40u, ASN7V, ASN7u, ASP36V, ASP36u, GLU146V, GLU146u, LYS5V, LYS5u
V-v -8.1121 21.9847 8 ARG21v, ARG40V, ASP28V, ASP28v, ASP32V, ASP36V, GLU123V, GLU123v
W-X -58.1085 19.9107 -312.065 -350.2627 130 31 12 13346 1 16 14
W-r -48.5093 -82.092 18 5-9.7018642.907696LYS, 6-5.5921482.836609ALA, 7-5.0798412.570414ASN, ALA6W, ARG40-4.3403982.698485, ARG40-4.5536612.591593, ARG40-6.7965222.755847, ARG40W, ARG40r, ASN7W, ASP36-8.0875163.039244, ASP36W, ASP36r, GLU146-4.3573612.661769, GLU146W, GLU146r, LYS5W, LYS5r
W-s -7.4236 23.3566 8 ARG21s, ARG40W, ASP28W, ASP28s, ASP32W, ASP36W, GLU123W, GLU123s
W-u -13.5848 24.1008 10 ARG21W, ARG40u, ASP28W, ASP28u, ASP32u, ASP36u, GLU123W, GLU123u, GLY130u, PHE25W
X-Y -28.5877 18.881 -294.063 -303.7697 129 14 12 12738 1 15 13
X-Z -13.6605 25.4298 -117.774 -106.0046 58 7 3 4937 2 6 15
X-4 -49.3163 -72.2148 -79.6109 -201.142 55 14 3 3911 6 12 10
X-r -16.7207 26.7117 13 ARG21X, ARG40r, ARG84X, ASP28X, ASP28r, ASP32r, ASP36-6.9170062.826512, ASP36r, GLU123X, GLU123r, GLY130-6.2613673.199241, LYS132-3.5423183.257203, PHE25X
Y-4 -15.1938 24.8914 -112.294 -102.5964 57 5 3 4816 2 6 15
Z-1 -48.9851 21.4854 -292.629 -320.1286 127 17 12 12951 1 15 13
Z-4 -48.433 19.1667 -303.777 -333.0433 129 22 13 13084 1 15 13
Z-q -47.1587 -77.2275 12 ALA6Z, ALA6q, ARG40Z, ARG40q, ASN7Z, ASN7q, ASP36Z, ASP36q, GLU146Z, GLU146q, LYS5Z, LYS5q
Z-r -13.7932 24.5696 11 ARG21-5.3928793.076475, ARG21r, ARG40Z, ASP28Z, ASP28r, ASP32Z, ASP36Z, GLU123Z, GLU123r, GLY130Z, PHE25-8.4003183.134342
1-2 -41.5077 17.3043 -290.848 -315.0514 128 20 12 12822 1 15 13
1-5 -40.9251 -68.578 -80.286 -189.7891 53 13 3 3863 6 12 10
1-6 -13.2995 24.0235 -117.595 -106.871 58 3 3 4907 2 6 14
1-q -7.5535 24.8479 8 ARG211, ARG40q, ASP281, ASP28q, ASP32q, ASP36q, GLU1231, GLU123q
2-3 -49.2292 19.9812 -287.696 -316.944 129 20 12 12722 1 15 13
2-5 -9.6994 28.1485 -117.454 -99.0049 57 7 3 4854 2 6 15
2-h -47.8829 -78.8231 -81.4939 -208.1998 56 16 3 4126 6 12 13
2-i -6.1636 24.281 -109.029 -90.9116 58 6 3 4751 2 6 14
3-4 -54.3316 19.2273 -310.351 -345.4553 130 22 13 13096 1 15 13
3-h -7.0317 22.0756 -102.101 -87.0571 57 8 3 4602 2 6 14
5-6 -50.4817 14.7376 -291.801 -327.5451 126 22 12 12939 1 16 14
5-9 -50.0485 16.909 -311.484 -344.6236 131 23 13 13366 1 15 13
5-i -13.6287 27.3051 -116.16 -102.4836 58 6 3 4944 2 6 14
6-7 -44.7092 18.4833 -294.562 -320.7879 126 17 12 12812 1 15 13
6-p -47.2652 -69.531 12 ALA66, ALA6p, ARG406, ARG40p, ASN76, ASN7p, ASP366, ASP36p, GLU1466, GLU146p, LYS56, LYS5p
6-q -14.478 25.6944 10 ARG21q, ARG406, ASP286, ASP28q, ASP326, ASP366, GLU1236, GLU123q, GLY1306, PHE25q
7-8 -50.4556 20.092 -292.444 -322.8076 127 16 12 12752 1 15 13
7-m -50.3721 -75.7326 12 ALA67, ALA6m, ARG407, ARG40m, ASN77, ASN7m, ASP367, ASP36m, GLU1467, GLU146m, LYS57, LYS5m
7-n -13.6288 24.3442 10 ARG21n, ARG407, ASP287, ASP28n, ASP327, ASP367, GLU1237, GLU123n, GLY1307, PHE25n
7-p -12.5823 26.47 9 ARG217, ARG40p, ASP287, ASP32p, ASP36p, GLU1237, GLU123p, GLY130p, PHE257
8-9 -46.8292 18.4786 -291.517 -319.8676 128 16 12 12845 1 15 13
8-a -14.0009 25.0594 -120.642 -109.5834 57 7 3 4982 2 6 14
8-e -41.1867 -69.1102 -84.071 -194.3679 54 12 3 3909 6 12 10
8-m -12.417 25.5472 10 ARG218, ARG40m, ASP288, ASP28m, ASP32m, ASP36m, GLU1238, GLU123m, GLY130m, PHE258
9-e -9.8215 25.4907 -111.544 -95.8748 58 5 3 4796 2 6 14
9-i -48.0517 -76.532 -85.0307 -209.6144 56 12 3 4062 6 12 12
9-j -6.9733 23.5209 -110.65 -94.1024 57 10 3 4819 2 6 14
a-b -48.9791 13.0405 -292.724 -328.6626 127 24 12 12814 1 15 13
a-e -40.578 21.2556 -289.409 -308.7313 127 16 12 12697 1 15 13
a-l -41.0043 -74.9451 13 ALA6a, ALA6l, ARG40a, ARG40l, ASN7a, ASN7l, ASP36a, ASP36l, GLN43l, GLU146a, GLU146l, LYS5a, LYS5l
a-m -14.4106 22.8705 10 ARG21m, ARG40a, ASP28a, ASP28m, ASP32a, ASP36a, GLU123a, GLU123m, GLY130a, PHE25m
b-c -55.2728 18.6826 -298.637 -335.2271 128 20 12 12942 1 15 14
b-l -7.7392 22.1173 8 ARG21b, ARG40l, ASP28b, ASP28l, ASP32l, ASP36l, GLU123b, GLU123l
c-d -48.1725 11.6649 -294.905 -331.4125 127 19 12 12743 1 15 13
d-e -42.8035 19.2455 -283.217 -306.775 126 16 11 12435 1 15 13
d-f -16.7243 27.0261 -129.679 -119.3772 59 7 3 5225 2 7 15
d-j -50.0595 -69.0665 -77.3108 -196.4368 48 8 3 3684 6 12 10
e-j -11.9713 25.9317 -119.177 -105.2165 57 6 3 4985 2 6 14
f-g -43.8679 19.6132 -279.749 -304.0037 129 16 12 12494 1 15 13
f-j -43.9404 13.1257 -249.826 -280.6408 119 21 6 10288 1 14 13
g-h -58.2475 16.3725 -324.351 -366.226 131 29 13 13735 1 15 13
h-i -48.0438 15.9805 -299.639 -331.7023 129 16 12 12978 1 15 13
i-j -46.3472 21.685 -294.125 -318.7872 128 18 12 12738 1 15 13
k-l -34.1293 15.9627 19 ARG128k, ARG21l, ASN2k, ASP107k, GLN106k, GLU146k, GLU59l, GLU65l, GLU91k, GLU91l, HIS89l, ILE49l, ILE4k, LYS136k, LYS5k, SER103l, SER98k, TYR58l, VAL51l
k-o -48.8348 19.1378 18 ARG128o, ARG21k, ASN2o, ASP107o, GLN124o, GLU146o, GLU59k, GLU65k, GLU91k, GLU91o, GLY86k, HIS89k, ILE49k, ILE4o, LYS136o, LYS5o, TRP53k, VAL51k
k-x -10.6201 29.3298 9 ARG21k, ARG40x, ASP28k, ASP32x, ASP36x, GLU123k, GLU123x, GLY130x, PHE25k
l-m -52.0091 10.246 16 ARG128l, ARG21m, ASN2l, GLN106l, GLU146l, GLU59m, GLU91l, GLU91m, HIS89m, ILE49m, ILE4l, LYS136l, LYS5l, SER103m, TRP53m, VAL51m
m-n -46.1364 21.7587 22 ALA88n, ARG128m, ARG21n, ASN2m, ASP107m, GLN106m, GLN124m, GLU146m, GLU59n, GLU65n, GLU91m, GLU91n, GLY86n, HIS89n, ILE49n, ILE4m, LYS136m, LYS5m, SER103n, THR118m, TRP53n, VAL51n
n-o -37.4936 18.873 18 ARG128n, ARG21o, ASN2n, ASP107n, GLN106n, GLU146n, GLU59o, GLU65o, GLU91n, GLU91o, HIS89o, ILE49o, ILE4n, LYS136n, LYS5n, SER103o, TRP53o, VAL51o
n-p -12.7495 25.4995 10 ARG21p, ARG40n, ASP28n, ASP28p, ASP32n, ASP36n, GLU123n, GLU123p, GLY130n, PHE25p
n-t -40.837 -71.0382 12 ALA6n, ALA6t, ARG40n, ARG40t, ASN7n, ASN7t, ASP36n, ASP36t, GLU146n, GLU146t, LYS5n, LYS5t
o-t -14.5661 25.8501 10 ARG21o, ARG40t, ASP28o, ASP28t, ASP32t, ASP36t, GLU123o, GLU123t, GLY130t, PHE25o
o-x -43.869 -71.4881 12 ALA6o, ALA6x, ARG40o, ARG40x, ASN7o, ASN7x, ASP36o, ASP36x, GLU146o, GLU146x, LYS5o, LYS5x
o-y -12.6402 26.1852 9 ARG21y, ARG40o, ASP28y, ASP32o, ASP36o, GLU123o, GLU123y, GLY130o, PHE25y
p-q -46.467 20.3365 18 ARG128p, ARG21q, ASN2p, ASP107p, GLN106p, GLU146p, GLU59q, GLU65q, GLU91p, GLU91q, HIS89q, ILE49q, ILE4p, LYS136p, LYS5p, SER103q, TRP53q, VAL51q
p-t -44.6286 11.4136 16 ARG128t, ARG21p, ASN2t, GLN124t, GLU146t, GLU59p, GLU91p, GLU91t, GLY86p, HIS89p, ILE49p, ILE4t, LYS136t, LYS5t, TRP53p, VAL51p
q-r -50.018 17.6686 20 ARG128q, ARG21-6.3905182.814660, ARG21r, ASN2q, ASP107q, GLN106q, GLU146q, GLU59r, GLU65r, GLU91q, GLU91r, HIS89r, ILE49-4.1636682.995266, ILE4q, LYS136q, LYS5q, SER103-6.2382323.157900, TRP53-9.9028223.067654, VAL51-15.8725182.669544, VAL51-7.4502123.149960
r-s -46.3511 20.9299 17 2-3.2936823.204334ASN, 2-7.8604973.196993ASN, 4-14.0884852.800768ILE, 4-9.0529843.130083ILE, ARG128r, ARG21s, ASP107r, GLN106-6.5856363.140528, GLU146-5.4698242.949869, GLU146r, GLU59s, GLU65s, GLU91r, GLU91s, HIS89s, LYS136r, LYS5r
s-t -57.1595 19.7405 22 ALA88t, ARG128s, ARG21t, ASN2s, ASP107s, GLN106s, GLN124s, GLU146s, GLU59t, GLU65t, GLU91s, GLU91t, GLY86t, HIS89t, ILE49t, ILE4s, LYS136s, LYS5s, SER103t, THR118s, TRP53t, VAL51t
s-u -13.4784 26.4895 10 ARG21u, ARG40s, ASP28s, ASP28u, ASP32s, ASP36s, GLU123s, GLU123u, GLY130s, PHE25u
s-y -48.8951 -72.2844 12 ALA6s, ALA6y, ARG40s, ARG40y, ASN7s, ASN7y, ASP36s, ASP36y, GLU146s, GLU146y, LYS5s, LYS5y
t-y -12.6507 26.6231 10 ARG21t, ARG40y, ASP28t, ASP28y, ASP32y, ASP36y, GLU123t, GLU123y, GLY130y, PHE25t
u-v -52.6024 20.3762 18 ARG128u, ARG21v, ASN2u, ASP107u, GLN106u, GLU146u, GLU59v, GLU65v, GLU91u, GLU91v, HIS89v, ILE49v, ILE4u, LYS136u, LYS5u, SER103v, TRP53v, VAL51v
u-y -36.4096 17.7567 18 ARG128y, ARG21u, ASN2y, ASP107y, GLN124y, GLU146y, GLU59u, GLU65u, GLU91u, GLU91y, GLY86u, HIS89u, ILE49u, ILE4y, LYS136y, LYS5y, TRP53u, VAL51u
v-w -55.9095 17.7157 22 ALA88w, ARG128v, ARG21w, ASN2v, ASP107v, GLN106v, GLN124v, GLU146v, GLU59w, GLU65w, GLU91v, GLU91w, GLY86w, HIS89w, ILE49w, ILE4v, LYS136v, LYS5v, SER103w, THR118v, TRP53w, VAL51w
w-x -40.8006 14.6992 17 ARG128w, ARG21x, ASN2w, GLN106w, GLN124w, GLU146w, GLU59x, GLU91w, GLU91x, GLY86x, HIS89x, ILE4w, LYS136w, LYS5w, SER103x, TRP53x, VAL51x
x-y -47.7982 12.8805 18 ARG128x, ARG21y, ASN2x, GLN106x, GLN124x, GLU146x, GLU59y, GLU91x, GLU91y, GLY86y, HIS89y, ILE49y, ILE4x, LYS136x, LYS5x, SER103y, TRP53y, VAL51y