3M8A

crystal structure of swine flu virus ns1 n-terminal rna binding domain from h1n1 influenza a/california/07/2009

• Total interactions analyzed: 66
• Total true interactions: 32
• Strongest Interaction:
  • Chains: I-L
  • Int. Res.: 103
  • Norm. En. per Res.: -4.9091
• Hub Node: B(8)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-10.1488	-8.8509	-93.7307	-112.7304	48	3	4	4466	0	31	16
A-D	0.0	0.0	-27.1069	-27.1069	14	1	0	974	0	0	2
A-G	-42.4062	-72.7502	-300.427	-415.5835	98	11	12	12439	4	44	35
A-H	0.0	-3.0193	-3.8469	-6.8662	10	1	0	270	0	5	2
A-J	0.0	0.0	-0.2861	-0.2861	6	0	0	46	0	2	2
A-K	0.0	10.6096	-0.2557	10.3539	12	0	0	56	0	6	7
B-C	-16.2948	0.0	-151.66	-167.9548	70	9	1	5962	0	5	7
B-D	0.0	0.0	-2.2435	-2.2435	11	0	0	266	0	6	2
B-E	0.0	0.0	-3.4599	-3.4599	14	0	0	239	0	8	4
B-F	0.0	0.0	-23.3372	-23.3372	13	0	0	918	0	1	2
B-G	0.0	-0.0248	-12.3076	-12.3323	18	2	0	582	2	6	2
B-H	-46.2251	-143.2626	-295.009	-484.4968	99	9	11	12787	5	46	42
B-I	-10.8678	-20.3569	-13.8609	-45.0856	12	1	0	643	2	5	2
B-K	0.0	0.0	-27.4576	-27.4576	21	2	1	1215	0	2	4
C-E	0.0	0.0	-0.1073	-0.1073	3	0	0	37	0	3	2
C-F	-40.2947	-129.944	-308.516	-478.7546	102	8	11	12900	6	54	45
C-H	0.0	0.0	-24.0268	-24.0268	12	0	0	942	0	1	2
C-I	0.0	-24.0826	-12.4885	-36.571	12	0	0	366	2	3	2
D-E	-31.2259	-95.6226	-310.381	-437.2296	99	9	12	12722	4	49	41
D-G	-20.9967	0.0	-154.16	-175.1567	71	14	1	6181	0	6	9
D-J	0.0	0.0	-0.251	-0.251	8	2	0	76	0	0	0
E-F	-2.1866	-2.9721	-8.5763	-13.735	12	0	0	509	0	10	6
E-G	0.0	0.0	-25.462	-25.462	14	0	0	919	0	1	2
F-I	0.0	-0.9599	-4.4299	-5.3898	19	0	0	502	0	9	6
G-J	0.0	0.0	15.6222	15.6222	20	12	0	242	0	6	4
G-K	0.0	0.0	-0.6575	-0.6575	6	0	0	44	0	2	2
H-I	0.0	11.0998	-35.0636	-23.9638	28	0	2	1789	0	16	7
H-J	0.0	0.0	-8.7566	-8.7566	7	0	0	412	0	0	1
H-K	-13.4574	17.2368	-118.865	-115.0856	54	1	2	5009	0	5	9
H-L	0.0	9.097	-1.1303	7.9666	11	0	0	178	0	4	2
I-L	-36.8956	-163.6101	-305.136	-505.6417	103	12	11	13266	6	51	44
J-K	-20.0046	-79.8405	-299.521	-399.366	97	9	13	12631	2	38	36

Interface residues

• A-B: ALA23A, ALA23B, ALA30A, ALA30B, ARG19A, ARG19B, ARG21A, ARG21B, ARG35A, ARG35B, ARG37A, ARG37B, ARG38A, ARG38B, ASN25A, ASN25B, ASP24A, ASP24B, ASP29A, ASP29B, ASP34A, ASP34B, ASP39A, GLN40A, GLN40B, GLY26A, GLY26B, GLY28A, GLY28B, LEU27A, LEU27B, LEU33A, LEU33B, LEU36A, LEU36B, LYS20A, LYS20B, LYS41A, LYS41B, LYS44A, PHE22A, PHE22B, PHE32A, PHE32B, PRO31A, PRO31B, TRP16A, TRP16B
• A-D: ARG21A, ASN25A, ASN4D, ASP24A, ASP29A, ASP2D, GLY26A, GLY28A, LEU27A, MET1D, MET6D, PHE22A, SER3D, THR5D
• A-G: ALA23A, ALA23G, ALA30A, ALA30G, ARG19A, ARG19G, ARG21A, ARG21G, ARG35A, ARG35G, ARG46A, ARG46G, ASN25A, ASN25G, ASN4A, ASN4G, ASP12A, ASP12G, ASP24A, ASP24G, ASP29A, ASP29G, ASP2A, ASP2G, ASP39A, ASP39G, CYS13A, CYS13G, GLN10A, GLN10G, GLU66A, GLU66G, GLU71A, GLU71G, GLU72G, GLY26A, GLY26G, GLY28A, GLY28G, GLY61A, GLY61G, HIS17A, HIS17G, ILE18A, ILE18G, ILE64A, ILE64G, ILE68A, ILE68G, LEU15A, LEU15G, LEU27A, LEU27G, LEU33A, LEU33G, LEU43A, LEU43G, LEU50A, LEU50G, LEU69A, LEU69G, LYS20A, LYS20G, LYS62A, LYS62G, LYS70A, LYS70G, MET6A, MET6G, PHE14A, PHE14G, PHE22A, PHE22G, PHE32A, PHE32G, PHE9A, PHE9G, PRO31A, PRO31G, SER3A, SER3G, SER42A, SER42G, SER7A, SER7G, SER8A, SER8G, THR5A, THR5G, TRP16A, TRP16G, TRP67A, TRP67G, VAL11A, VAL11G, VAL60G, VAL65A, VAL65G
• A-H: ASN4H, ASP24A, ASP2H, GLN40A, LYS20A, LYS44A, SER3H, SER8H, THR5H, TRP16A
• A-J: GLU71J, GLU72J, LEU27A, LYS62A, PHE22A, THR5J
• A-K: ARG21A, ARG21K, ASP24A, ASP24K, GLN63A, GLU55A, GLU55K, LEU59A, LEU59K, LYS20K, LYS62A, LYS62K
• B-C: ALA0C, ALA57B, ALA57C, ASN48B, ASN48C, ASN4B, ASN4C, ASP2B, ASP2C, ASP53B, ASP53C, GLN10B, GLN10C, GLN63B, GLN63C, GLU55B, GLU55C, GLU66B, GLU66C, GLU71B, GLU71C, GLY47B, GLY47C, GLY51B, GLY51C, GLY61B, GLY61C, ILE54B, ILE54C, ILE64B, ILE64C, ILE68B, ILE68C, LEU50B, LEU50C, LEU52B, LEU52C, LEU59B, LEU59C, LYS62B, LYS62C, LYS70B, LYS70C, MET1B, MET1C, MET6B, MET6C, PHE9B, PHE9C, SER3B, SER3C, SER7B, SER7C, SER8B, SER8C, THR49B, THR49C, THR56B, THR56C, THR58C, THR5B, THR5C, TRP67B, TRP67C, VAL11B, VAL11C, VAL60B, VAL60C, VAL65B, VAL65C
• B-D: ARG37B, ASN4D, ASP24B, ASP2D, GLN40B, LYS20B, LYS44B, MET1D, SER3D, THR5D, TRP16B
• B-E: ALA30E, ASN25E, ASN48B, ASP24E, ASP29E, ASP53B, GLU55B, GLY26E, GLY28E, ILE54B, LEU27E, LEU33E, LYS44B, PRO31E
• B-F: ARG21F, ASN25F, ASN4B, ASP29F, ASP2B, GLY26F, GLY28F, LEU27F, MET1B, MET6B, PHE22F, SER3B, THR5B
• B-G: ARG37B, ARG38B, ASN25B, ASN4G, ASP24B, ASP2G, GLN40B, GLU72G, GLY26B, LEU36B, LYS41B, LYS44B, MET6G, SER3G, SER7G, SER8G, THR5G, TRP16B
• B-H: ALA23B, ALA23H, ALA30B, ALA30H, ARG19B, ARG19H, ARG21B, ARG21H, ARG35B, ARG35H, ARG38B, ARG46B, ARG46H, ASN25B, ASN25H, ASN4B, ASN4H, ASP12B, ASP12H, ASP24B, ASP24H, ASP29B, ASP29H, ASP2B, ASP2H, ASP39B, ASP39H, CYS13B, CYS13H, GLN10B, GLN10H, GLU66B, GLU66H, GLU71B, GLU71H, GLU72H, GLY26B, GLY26H, GLY28B, GLY28H, GLY61B, GLY61H, HIS17B, HIS17H, ILE18B, ILE18H, ILE64B, ILE64H, ILE68B, ILE68H, LEU15B, LEU15H, LEU27B, LEU27H, LEU33B, LEU33H, LEU43B, LEU43H, LEU50B, LEU50H, LEU69B, LEU69H, LYS20B, LYS20H, LYS62B, LYS62H, LYS70H, MET6B, MET6H, PHE14B, PHE14H, PHE22B, PHE22H, PHE32B, PHE32H, PHE9B, PHE9H, PRO31B, PRO31H, SER3B, SER3H, SER42B, SER42H, SER7B, SER7H, SER8B, SER8H, THR5B, THR5H, TRP16B, TRP16H, TRP67B, TRP67H, VAL11B, VAL11H, VAL60B, VAL60H, VAL65B, VAL65H
• B-I: ARG35I, ARG37I, ARG38I, ASN4B, ASP2B, ASP34I, LEU33I, LYS41I, MET1B, SER3B, SER7B, THR5B
• B-K: ALA23B, ALA57K, ARG21B, ASN25B, ASP24B, ASP53K, GLN10K, GLN63K, GLU55K, GLU66K, GLY26B, GLY28B, GLY61K, ILE64K, LEU27B, LEU59K, LYS62K, PHE22B, THR56K, THR58K, VAL60K
• C-E: ARG37E, GLU66C, LYS62C
• C-F: ALA23C, ALA23F, ALA30C, ALA30F, ARG19C, ARG19F, ARG21C, ARG21F, ARG35C, ARG35F, ARG38C, ARG38F, ARG46C, ARG46F, ASN25C, ASN25F, ASN4C, ASN4F, ASP12C, ASP12F, ASP24C, ASP24F, ASP29C, ASP29F, ASP2C, ASP2F, ASP39C, ASP39F, CYS13C, CYS13F, GLN10C, GLN10F, GLU66C, GLU66F, GLU71C, GLU71F, GLU72C, GLU72F, GLY26C, GLY26F, GLY28C, GLY28F, GLY61C, GLY61F, HIS17C, HIS17F, ILE18C, ILE18F, ILE64C, ILE64F, ILE68C, ILE68F, LEU15C, LEU15F, LEU27C, LEU27F, LEU33C, LEU33F, LEU43C, LEU43F, LEU50C, LEU50F, LEU59C, LEU69C, LEU69F, LYS20C, LYS20F, LYS62C, LYS62F, MET6C, MET6F, PHE14C, PHE14F, PHE22C, PHE22F, PHE32C, PHE32F, PHE9C, PHE9F, PRO31C, PRO31F, SER3C, SER3F, SER42C, SER42F, SER7C, SER7F, SER8C, SER8F, THR58C, THR5C, THR5F, TRP16C, TRP16F, TRP67C, TRP67F, VAL11C, VAL11F, VAL60C, VAL60F, VAL65C, VAL65F
• C-H: ALA0C, ASN25H, ASN4C, ASP2C, GLY26H, GLY28H, LEU27H, MET1C, MET6C, PHE22H, SER3C, THR5C
• C-I: ARG37I, ASN4C, ASP2C, GLN40I, LYS20I, LYS41I, MET1C, MET6C, SER3C, SER7C, THR5C, TRP67C
• D-E: ALA23D, ALA23E, ALA30D, ALA30E, ARG19D, ARG19E, ARG21D, ARG21E, ARG35D, ARG35E, ARG38D, ARG46D, ARG46E, ASN25D, ASN25E, ASN4D, ASN4E, ASP12D, ASP12E, ASP24D, ASP24E, ASP29D, ASP29E, ASP2D, ASP2E, ASP39D, ASP39E, CYS13D, CYS13E, GLN10D, GLN10E, GLU66D, GLU66E, GLU71D, GLU71E, GLU72E, GLY26D, GLY26E, GLY28D, GLY28E, GLY61D, GLY61E, HIS17D, HIS17E, ILE18D, ILE18E, ILE64D, ILE64E, ILE68D, ILE68E, LEU15D, LEU15E, LEU27D, LEU27E, LEU33D, LEU33E, LEU43D, LEU43E, LEU50D, LEU50E, LEU69D, LEU69E, LYS20D, LYS20E, LYS62D, LYS62E, LYS70D, MET6D, MET6E, PHE14D, PHE14E, PHE22D, PHE22E, PHE32D, PHE32E, PHE9D, PHE9E, PRO31D, PRO31E, SER3D, SER3E, SER42D, SER42E, SER7D, SER7E, SER8D, SER8E, THR5D, THR5E, TRP16D, TRP16E, TRP67D, TRP67E, VAL11D, VAL11E, VAL60D, VAL60E, VAL65D, VAL65E
• D-G: ALA0G, ALA57D, ALA57G, ASN48D, ASN48G, ASN4D, ASN4G, ASP2D, ASP2G, ASP53D, ASP53G, GLN10D, GLN10G, GLN63D, GLN63G, GLU55D, GLU55G, GLU66D, GLU66G, GLU71D, GLU71G, GLU72G, GLY47D, GLY47G, GLY51D, GLY51G, GLY61D, GLY61G, ILE54D, ILE54G, ILE64D, ILE64G, ILE68D, ILE68G, LEU50D, LEU50G, LEU52D, LEU52G, LEU59D, LEU59G, LEU69G, LYS62D, LYS62G, LYS70D, LYS70G, MET1D, MET1G, MET6D, MET6G, PHE9D, PHE9G, SER3D, SER3G, SER7D, SER7G, SER8D, SER8G, THR49D, THR49G, THR56D, THR56G, THR5D, THR5G, TRP67D, TRP67G, VAL11D, VAL11G, VAL60D, VAL60G, VAL65D, VAL65G
• D-J: ASP53D, GLN10D, GLY51D, LEU50D, LEU52D, MET1D, MET6D, THR5J
• E-F: ARG37E, ARG38E, ASN48E, GLU71F, GLU72F, GLY45E, ILE68F, LEU69F, LYS41E, LYS44E, LYS70F, TRP67F
• E-G: ALA0G, ARG21E, ASN25E, ASN4G, ASP29E, ASP2G, GLY26E, GLY28E, LEU27E, MET1G, MET6G, PHE22E, SER3G, THR5G
• F-I: ALA23F, ALA30F, ARG37F, ARG37I, ASN25F, ASN48I, ASP24F, ASP29F, GLN40I, GLU55I, GLY26F, GLY28F, GLY45I, LEU27F, LEU33F, LYS20F, LYS20I, LYS41I, LYS44I
• G-J: GLN10G, GLN63G, GLU66G, GLU71G, GLU71J, GLY61G, ILE64G, ILE68G, LEU59G, LEU69G, LEU69J, LYS62G, LYS70G, LYS70J, SER7G, THR5J, TRP67G, VAL11G, VAL60G, VAL65G
• G-K: GLN63K, GLU66K, GLU71G, GLU72G, LEU59K, LYS62K
• H-I: ALA23H, ALA30H, ALA30I, ARG19H, ARG21H, ARG35I, ARG37H, ARG37I, ARG38I, ASN25H, ASP24H, ASP29H, ASP29I, ASP34H, ASP34I, GLY26H, GLY28H, GLY28I, LEU27H, LEU33H, LEU33I, LEU36H, LYS20H, PHE22H, PHE32H, PHE32I, PRO31H, PRO31I
• H-J: ASN25J, GLN63H, GLY26J, LEU27J, LYS70H, PHE22J, TRP67H
• H-K: ALA57H, ALA57K, ASN4H, ASN4K, ASP2H, ASP2K, ASP53K, GLN10H, GLN10K, GLN63H, GLN63K, GLU55K, GLU66H, GLU66K, GLU71H, GLU72H, GLY51K, GLY61H, GLY61K, ILE54K, ILE64H, ILE64K, ILE68H, ILE68K, LEU50K, LEU52H, LEU52K, LEU59H, LEU59K, LYS62H, LYS70H, LYS70K, MET6H, MET6K, PHE9K, SER3H, SER3K, SER7H, SER7K, SER8H, SER8K, THR56H, THR56K, THR58H, THR5H, THR5K, TRP67H, TRP67K, VAL11H, VAL11K, VAL60H, VAL60K, VAL65H, VAL65K
• H-L: ALA0L, ARG37H, ASN4L, ASP24H, ASP2L, GLN40H, LYS20H, LYS41H, LYS44H, THR49L, THR5L
• I-L: ALA23I, ALA23L, ALA30I, ALA30L, ARG19I, ARG19L, ARG21I, ARG21L, ARG35I, ARG35L, ARG38I, ARG38L, ARG46I, ARG46L, ASN25I, ASN25L, ASN4I, ASN4L, ASP12I, ASP12L, ASP24I, ASP24L, ASP29I, ASP29L, ASP2I, ASP2L, ASP39I, ASP39L, CYS13I, CYS13L, GLN10I, GLN10L, GLU66I, GLU66L, GLU71I, GLU71L, GLU72I, GLU72L, GLY26I, GLY26L, GLY28I, GLY28L, GLY61I, GLY61L, HIS17I, HIS17L, ILE18I, ILE18L, ILE64I, ILE64L, ILE68I, ILE68L, LEU15I, LEU15L, LEU27I, LEU27L, LEU33I, LEU33L, LEU43I, LEU43L, LEU50I, LEU50L, LEU69I, LEU69L, LYS20I, LYS20L, LYS62I, LYS62L, MET1I, MET6I, MET6L, PHE14I, PHE14L, PHE22I, PHE22L, PHE32I, PHE32L, PHE9I, PHE9L, PRO31I, PRO31L, SER3I, SER3L, SER42I, SER42L, SER7I, SER7L, SER8I, SER8L, THR58I, THR58L, THR5I, THR5L, TRP16I, TRP16L, TRP67I, TRP67L, VAL11I, VAL11L, VAL60I, VAL60L, VAL65I, VAL65L
• J-K: ALA23J, ALA23K, ALA30J, ALA30K, ARG19J, ARG19K, ARG21J, ARG21K, ARG35J, ARG35K, ARG46J, ARG46K, ASN25J, ASN25K, ASN4J, ASN4K, ASP12J, ASP12K, ASP24J, ASP24K, ASP29J, ASP29K, ASP2J, ASP2K, ASP39J, ASP39K, CYS13J, CYS13K, GLN10J, GLN10K, GLU66J, GLU66K, GLU71J, GLU72J, GLY26J, GLY26K, GLY28J, GLY28K, GLY61J, GLY61K, HIS17J, HIS17K, ILE18J, ILE18K, ILE64J, ILE64K, ILE68J, ILE68K, LEU15J, LEU15K, LEU27J, LEU27K, LEU33J, LEU33K, LEU43J, LEU43K, LEU50J, LEU50K, LEU69J, LEU69K, LYS20J, LYS20K, LYS62J, LYS62K, LYS70K, MET1K, MET6J, MET6K, PHE14J, PHE14K, PHE22J, PHE22K, PHE32J, PHE32K, PHE9J, PHE9K, PRO31J, PRO31K, SER3J, SER3K, SER42J, SER42K, SER7J, SER7K, SER8J, SER8K, THR5J, THR5K, TRP16J, TRP16K, TRP67J, TRP67K, VAL11J, VAL11K, VAL60J, VAL65J, VAL65K