3M85

archaeoglobus fulgidus exosome y70a with rna bound to the active site

• Total interactions analyzed: 66
• Total true interactions: 24
• Strongest Interaction:
  • Chains: F-I
  • Int. Res.: 138
  • Norm. En. per Res.: -4.7544
• Hub Node: A(6)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	40.0297	-8.8203	31.2094	12	0	0	295	0	4	4
A-C	0.0	18.5806	-2.4242	16.1563	11	0	0	209	0	2	4
A-D	-39.1519	-69.9363	-272.526	-381.6142	108	16	7	11486	2	33	31
A-F	0.0	2.7471	-25.5222	-22.7751	24	3	0	1299	0	11	6
A-G	0.0	0.0	-0.0198	-0.0198	2	0	0	6	0	0	1
A-I	-11.5612	-37.1589	-149.137	-197.8572	60	4	4	6413	5	31	27
B-C	0.0	18.0502	-2.8038	15.2464	12	0	0	181	0	2	4
B-D	0.0	0.0	-16.7875	-16.7875	22	0	0	1099	0	11	6
B-E	-14.8481	-117.6195	-279.206	-411.6736	108	10	7	11392	8	34	30
B-G	-19.0424	-65.8006	-136.619	-221.462	60	9	4	5942	7	31	28
B-H	0.0	0.0	-0.0035	-0.0035	2	0	0	2	0	0	1
C-E	0.0	6.8478	-25.4554	-18.6076	24	1	0	1294	0	10	5
C-F	-25.1478	-107.041	-273.958	-406.1468	107	7	7	11260	8	34	29
C-H	-20.4652	-65.6226	-137.115	-223.2029	61	10	4	6133	9	29	27
C-I	0.0	0.0	-0.0023	-0.0023	2	0	0	1	0	0	0
D-E	0.0	7.2418	-4.8414	2.4005	7	0	0	134	0	4	3
D-F	0.0	-0.2225	-2.7734	-2.9959	9	0	0	145	0	5	3
D-G	-139.2716	-102.4188	-354.263	-595.9534	137	42	11	15508	8	72	70
D-I	-77.8613	-132.4405	-296.459	-506.7608	125	34	9	14332	9	50	48
E-F	0.0	-1.871	-0.0515	-1.9225	6	0	0	16	0	3	3
E-G	-61.2609	-110.6747	-325.169	-497.1045	125	29	9	14310	9	49	47
E-H	-124.1807	-94.2377	-382.898	-601.3164	139	38	11	16468	9	79	71
F-H	-80.5427	-129.5146	-302.402	-512.4593	131	47	12	14848	9	49	48
F-I	-157.9191	-98.9112	-399.283	-656.1132	138	34	10	16314	12	80	71

Interface residues

• A-B: ARG164B, ASN145B, CYS146B, CYS162B, GLU161B, GLU24A, GLU25A, GLY26A, GLY27A, LYS18A, PRO160B, TYR23A
• A-C: ASN145A, CYS146A, CYS162A, GLU161A, GLU24C, GLU25C, GLY26C, GLY27C, LYS18C, PRO160A, TYR23C
• A-D: ALA147D, ALA151D, ALA236D, ALA31A, ALA32A, ALA33D, ALA34A, ALA39D, ARG120D, ARG194D, ARG234D, ARG239D, ARG240D, ARG2A, ARG38D, ARG60D, ARG85A, ARG90A, ARG9A, ASN195D, ASN84A, ASN89A, ASP150D, ASP40D, ASP8A, GLN233D, GLU116D, GLU199D, GLU231D, GLU235D, GLU243D, GLU24A, GLU25A, GLU28A, GLU47A, GLU54A, GLU61D, GLU76A, GLY152D, GLY157D, GLY196D, GLY21A, GLY245D, GLY26A, GLY35A, GLY41D, GLY58D, GLY7A, GLY86A, GLY91A, HIS63D, ILE10A, ILE123D, ILE159D, ILE193D, ILE237D, ILE242D, ILE49A, ILE52A, LEU117D, LEU148D, LEU192D, LEU238D, LEU29A, LEU37A, LYS156D, LYS18A, LYS197D, LYS36A, MET114D, MET155D, MET158D, MET1A, MET248D, MET5A, PHE118D, PHE30A, PHE3A, PHE57D, PRO119D, PRO154D, PRO51A, PRO53A, PRO59D, PRO6A, PRO87A, SER121D, SER145D, SER34D, SER48A, SER50A, SER78A, SER88A, TYR230D, TYR23A, TYR241D, VAL112D, VAL146D, VAL149D, VAL153D, VAL22A, VAL244D, VAL33A, VAL46A, VAL4A, VAL56D, VAL62D, VAL77A
• A-F: ALA73F, ARG120F, ARG140A, ARG64A, ASN145A, ASP69F, CYS143A, CYS146A, GLU116F, GLU161A, LEU115A, LEU117F, LEU142A, LYS115F, LYS147A, LYS156F, LYS72F, MET114F, PRO119F, PRO70F, SER71F, THR148A, TYR114A, VAL66A
• A-G: GLU25A, LEU232G
• A-I: ALA141A, ARG11I, ARG140A, ARG152A, ARG19I, ARG64A, ARG85A, ARG90A, ASN84A, ASP116A, ASP12I, ASP173A, ASP4I, ASP8I, GLU149A, GLU178A, GLU3I, GLU76A, GLU83A, GLY175A, GLY177A, GLY63A, GLY82A, GLY86A, GLY91A, ILE117A, ILE5I, ILE75A, ILE92A, ILE9I, LEU115A, LEU118A, LEU139A, LEU142A, LEU15I, LEU62A, LEU6I, LYS10I, LYS119A, LYS176A, LYS17I, LYS80A, LYS81A, MET1I, PRO2I, PRO87A, SER16I, SER78A, SER79A, THR148A, TRP179A, TYR13I, TYR174A, VAL138A, VAL14I, VAL151A, VAL65A, VAL66A, VAL77A, VAL7I
• B-C: ASN145C, CYS146C, CYS162C, GLU161C, GLU24B, GLU25B, GLY163C, GLY26B, GLY27B, LYS18B, PRO160C, TYR23B
• B-D: ARG120D, ARG140B, ARG64B, ASN145B, ASP69D, CYS143B, CYS146B, GLU116D, LEU115B, LEU117D, LEU142B, LYS115D, LYS147B, LYS72D, PHE118D, PRO119D, PRO70D, SER144B, SER71D, THR148B, TYR114B, VAL66B
• B-E: ALA147E, ALA151E, ALA236E, ALA31B, ALA32B, ALA33E, ALA34B, ALA39E, ARG120E, ARG194E, ARG234E, ARG239E, ARG240E, ARG2B, ARG38E, ARG60E, ARG85B, ARG90B, ARG9B, ASN195E, ASN84B, ASN89B, ASP150E, ASP40E, ASP8B, GLN233E, GLU199E, GLU20B, GLU231E, GLU235E, GLU243E, GLU24B, GLU25B, GLU28B, GLU47B, GLU54B, GLU61E, GLU76B, GLY152E, GLY157E, GLY196E, GLY21B, GLY245E, GLY26B, GLY35B, GLY41E, GLY58E, GLY7B, GLY86B, GLY91B, ILE10B, ILE123E, ILE159E, ILE193E, ILE237E, ILE242E, ILE38B, ILE49B, ILE52B, LEU117E, LEU148E, LEU192E, LEU238E, LEU29B, LEU37B, LYS156E, LYS18B, LYS197E, LYS36B, MET114E, MET155E, MET158E, MET1B, MET232E, MET248E, MET5B, PHE118E, PHE30B, PHE3B, PHE57E, PRO119E, PRO154E, PRO51B, PRO53B, PRO59E, PRO6B, PRO87B, SER121E, SER145E, SER34E, SER48B, SER50B, SER78B, SER88B, THR160E, TYR230E, TYR23B, TYR241E, VAL112E, VAL146E, VAL149E, VAL153E, VAL22B, VAL244E, VAL33B, VAL46B, VAL4B, VAL56E
• B-G: ALA141B, ARG11G, ARG140B, ARG19G, ARG64B, ARG90B, ASN84B, ASP116B, ASP12G, ASP173B, ASP4G, ASP8G, GLU149B, GLU178B, GLU3G, GLU76B, GLU83B, GLY175B, GLY177B, GLY63B, GLY86B, GLY91B, ILE117B, ILE5G, ILE75B, ILE92B, ILE9G, LEU115B, LEU118B, LEU139B, LEU142B, LEU15G, LEU62B, LEU6G, LYS10G, LYS119B, LYS176B, LYS17G, LYS80B, LYS81B, MET150B, MET1G, PRO160B, PRO2G, PRO87B, SER16G, SER206G, SER78B, SER79B, THR148B, TRP179B, TYR13G, TYR174B, VAL138B, VAL14G, VAL151B, VAL65B, VAL66B, VAL77B, VAL7G
• B-H: GLU25B, LEU232H
• C-E: ARG120E, ARG140C, ARG64C, ASN145C, ASP69E, CYS143C, CYS146C, GLN68E, GLU116E, GLU161C, LEU115C, LEU117E, LEU142C, LYS147C, LYS156E, LYS72E, MET114E, PRO119E, PRO70E, SER144C, SER71E, THR148C, TYR114C, VAL66C
• C-F: ALA147F, ALA151F, ALA236F, ALA31C, ALA32C, ALA33F, ALA34C, ALA39F, ARG120F, ARG194F, ARG234F, ARG239F, ARG240F, ARG2C, ARG38F, ARG60F, ARG85C, ARG90C, ARG9C, ASN195F, ASN84C, ASN89C, ASP150F, ASP40F, ASP8C, GLN233F, GLU199F, GLU231F, GLU235F, GLU24C, GLU25C, GLU28C, GLU47C, GLU54C, GLU61F, GLY11C, GLY152F, GLY157F, GLY196F, GLY21C, GLY245F, GLY26C, GLY35C, GLY41F, GLY58F, GLY7C, GLY86C, GLY91C, HIS63F, ILE10C, ILE123F, ILE159F, ILE193F, ILE237F, ILE242F, ILE38C, ILE49C, ILE52C, ILE92C, LEU117F, LEU148F, LEU192F, LEU238F, LEU29C, LEU37C, LYS156F, LYS18C, LYS197F, LYS36C, MET114F, MET155F, MET158F, MET1C, MET232F, MET248F, MET5C, PHE118F, PHE30C, PHE3C, PHE57F, PRO119F, PRO154F, PRO51C, PRO53C, PRO59F, PRO6C, PRO87C, SER121F, SER145F, SER34F, SER48C, SER50C, SER78C, SER88C, TYR230F, TYR23C, TYR241F, VAL112F, VAL146F, VAL149F, VAL153F, VAL22C, VAL244F, VAL33C, VAL46C, VAL4C, VAL56F
• C-H: ALA141C, ARG11H, ARG140C, ARG152C, ARG19H, ARG64C, ARG85C, ARG90C, ASN84C, ASP116C, ASP12H, ASP173C, ASP4H, ASP8H, GLU149C, GLU178C, GLU3H, GLU76C, GLU83C, GLY175C, GLY177C, GLY63C, GLY86C, GLY91C, ILE117C, ILE5H, ILE75C, ILE92C, ILE9H, LEU115C, LEU118C, LEU139C, LEU142C, LEU15H, LEU62C, LEU6H, LYS10H, LYS119C, LYS176C, LYS17H, LYS80C, LYS81C, MET1H, PRO2H, PRO87C, SER16H, SER206H, SER78C, SER79C, THR148C, TRP179C, TYR114C, TYR13H, TYR174C, VAL14H, VAL151C, VAL61C, VAL65C, VAL66C, VAL77C, VAL7H
• C-I: GLU25C, LEU232I
• D-E: ARG89E, ARG96D, GLU65D, HIS63E, HIS66D, LEU67D, PRO92E
• D-F: ARG89D, ARG96F, GLU65D, HIS63D, HIS66D, HIS66F, PRO64D, PRO64F, PRO92D
• D-G: ALA106G, ALA108D, ALA111D, ALA118G, ALA185D, ALA190D, ALA202D, ALA218D, ALA224G, ALA83G, ARG107G, ARG111G, ARG114G, ARG137D, ARG181G, ARG194D, ARG209D, ARG212D, ARG250G, ARG96D, ARG97D, ASN101G, ASN181D, ASN221G, ASN82G, ASP110G, ASP182G, ASP186D, ASP207D, ASP209G, ASP213D, ASP217G, ASP219G, ASP220G, ASP234G, ASP239G, ASP243G, ASP4G, ASP69D, ASP72G, ASP95D, ASP99G, GLN205D, GLN217D, GLN226G, GLN68D, GLU100D, GLU100G, GLU104G, GLU107D, GLU110D, GLU115G, GLU117G, GLU184D, GLU199D, GLU214D, GLU220D, GLU235G, GLU240G, GLU88D, GLY112G, GLY157D, GLY208D, GLY229G, GLY230G, HIS66D, ILE101D, ILE103G, ILE113D, ILE159D, ILE193D, ILE198D, ILE201D, ILE214G, ILE219D, ILE246G, ILE80G, ILE99D, LEU105G, LEU192D, LEU203D, LEU204D, LEU212G, LEU232G, LEU233G, LEU237G, LEU241G, LEU242G, LEU67D, LYS103D, LYS106D, LYS115D, LYS156D, LYS166D, LYS216D, LYS218G, LYS223D, LYS227G, LYS236G, LYS72D, MET158D, MET187D, MET1G, MET206D, MET210D, MET225G, PHE109D, PHE182D, PHE189D, PHE191D, PHE238G, PRO188D, PRO70D, PRO71G, PRO97G, PRO98G, SER102D, SER102G, SER116G, SER200D, SER228G, SER98D, THR210G, THR211D, THR211G, THR213G, THR215G, THR216G, TYR231G, VAL104D, VAL108G, VAL112D, VAL215D, VAL222G, VAL223G, VAL244G, VAL81G
• D-I: ALA132D, ALA134D, ALA141I, ALA147D, ALA39D, ALA45I, ALA49I, ALA54D, ALA55D, ALA82D, ALA83I, ALA89I, ARG169I, ARG202I, ARG27D, ARG33I, ARG38D, ARG60D, ARG76D, ARG78D, ARG89D, ARG91D, ASN40I, ASN50D, ASN80D, ASN82I, ASP124D, ASP133D, ASP138I, ASP143I, ASP144I, ASP145I, ASP40D, ASP55I, CYS43D, GLN131D, GLN57I, GLN65I, GLU128D, GLU203I, GLU204I, GLU3I, GLU43I, GLU46D, GLU46I, GLU61D, GLU84I, GLU87D, GLU88D, GLU94I, GLY146I, GLY41D, GLY47I, GLY58D, GLY61I, GLY93D, GLY96I, HIS140I, HIS63D, ILE125D, ILE134I, ILE139I, ILE42I, ILE53D, ILE80I, LEU130D, LEU142I, LEU36D, LEU50I, LEU6I, LEU88I, LYS10I, LYS177D, LYS37D, LYS44I, LYS49D, LYS51D, LYS52I, LYS63I, LYS90D, MET1I, MET205I, MET64I, MET81D, PHE126D, PHE136I, PHE170I, PHE57D, PHE84D, PHE93I, PRO166I, PRO2I, PRO64D, PRO66I, PRO83D, PRO87I, PRO91I, PRO92D, PRO94D, PRO95I, PRO97I, PRO98I, SER201I, SER42D, SER48I, SER85D, SER90I, THR56I, THR92I, TYR44D, VAL127D, VAL129D, VAL135I, VAL137I, VAL35D, VAL41I, VAL56D, VAL58I, VAL59I, VAL60I, VAL62I, VAL7I, VAL81I, VAL86D, VAL86I
• E-F: ARG89F, ARG96E, GLU65F, HIS63F, HIS66E, PRO92F
• E-G: ALA132E, ALA134E, ALA141G, ALA159G, ALA39E, ALA45G, ALA49G, ALA54E, ALA55E, ALA82E, ALA83G, ALA89G, ARG169G, ARG202G, ARG33G, ARG38E, ARG60E, ARG76E, ARG78E, ARG89E, ARG91E, ASN40G, ASN50E, ASN80E, ASN82G, ASP124E, ASP133E, ASP138G, ASP143G, ASP144G, ASP145G, ASP40E, ASP4G, ASP55G, CYS43E, GLN131E, GLN57G, GLN65G, GLU128E, GLU203G, GLU204G, GLU3G, GLU43G, GLU46E, GLU46G, GLU61E, GLU84G, GLU87E, GLU88E, GLU94G, GLY146G, GLY41E, GLY47G, GLY54G, GLY58E, GLY61G, GLY93E, GLY96G, HIS140G, HIS63E, ILE125E, ILE134G, ILE139G, ILE42G, ILE53E, ILE80G, LEU130E, LEU142G, LEU148G, LEU36E, LEU50G, LEU85G, LEU88G, LYS10G, LYS177E, LYS37E, LYS44G, LYS49E, LYS51E, LYS63G, LYS90E, MET1G, MET205G, MET64G, MET81E, PHE126E, PHE136G, PHE170G, PHE57E, PHE84E, PHE93G, PRO2G, PRO66G, PRO83E, PRO87G, PRO91G, PRO92E, PRO94E, PRO95G, PRO97G, PRO98G, SER201G, SER42E, SER48G, SER85E, SER90G, THR56G, THR92G, TYR44E, VAL127E, VAL129E, VAL135G, VAL137G, VAL35E, VAL41G, VAL52E, VAL56E, VAL58G, VAL59G, VAL60G, VAL62G, VAL7G, VAL81G, VAL86E, VAL86G
• E-H: ALA106H, ALA108E, ALA111E, ALA118H, ALA185E, ALA190E, ALA202E, ALA218E, ALA224H, ALA83H, ARG107H, ARG111H, ARG114H, ARG137E, ARG181H, ARG194E, ARG209E, ARG212E, ARG96E, ARG97E, ASN101H, ASN181E, ASN221H, ASN247H, ASN82H, ASP110H, ASP182H, ASP186E, ASP207E, ASP209H, ASP213E, ASP217H, ASP219H, ASP220H, ASP234H, ASP239H, ASP243H, ASP69E, ASP72H, ASP95E, ASP99H, GLN205E, GLN217E, GLN226H, GLN68E, GLU100E, GLU100H, GLU104H, GLU107E, GLU110E, GLU115H, GLU117H, GLU184E, GLU199E, GLU214E, GLU220E, GLU235H, GLU240H, GLU6E, GLU88E, GLY112H, GLY157E, GLY208E, GLY229H, GLY230H, HIS66E, ILE101E, ILE103H, ILE113E, ILE113H, ILE139H, ILE159E, ILE191H, ILE193E, ILE198E, ILE201E, ILE214H, ILE219E, ILE246H, ILE80H, ILE99E, LEU105H, LEU192E, LEU203E, LEU204E, LEU212H, LEU232H, LEU233H, LEU237H, LEU242H, LYS103E, LYS106E, LYS115E, LYS156E, LYS166E, LYS216E, LYS218H, LYS223E, LYS227H, LYS236H, LYS72E, MET158E, MET187E, MET1H, MET206E, MET210E, MET225H, PHE109E, PHE182E, PHE189E, PHE191E, PHE238H, PRO188E, PRO70E, PRO71H, PRO98H, SER102E, SER102H, SER116H, SER200E, SER228H, SER71E, SER98E, THR210H, THR211E, THR211H, THR213H, THR215H, THR216H, TYR231H, VAL104E, VAL108H, VAL109H, VAL112E, VAL215E, VAL222H, VAL223H, VAL244H, VAL81H
• F-H: ALA132F, ALA134F, ALA141H, ALA39F, ALA45H, ALA54F, ALA55F, ALA82F, ALA83H, ALA89H, ARG169H, ARG202H, ARG27F, ARG33H, ARG38F, ARG60F, ARG76F, ARG78F, ARG89F, ARG91F, ASN181F, ASN40H, ASN50F, ASN80F, ASN82H, ASP124F, ASP133F, ASP138H, ASP143H, ASP144H, ASP145H, ASP40F, ASP4H, ASP55H, CYS43F, GLN131F, GLN57H, GLN65H, GLU128F, GLU178F, GLU203H, GLU204H, GLU3H, GLU43H, GLU46F, GLU46H, GLU61F, GLU84H, GLU87F, GLU88F, GLU94H, GLY146H, GLY41F, GLY47H, GLY48F, GLY54H, GLY58F, GLY61H, GLY93F, GLY96H, HIS140H, HIS63F, ILE125F, ILE134H, ILE139H, ILE24H, ILE42H, ILE53F, ILE80H, LEU130F, LEU142H, LEU36F, LEU50H, LEU85H, LEU88H, LYS10H, LYS177F, LYS37F, LYS44H, LYS49F, LYS51F, LYS52H, LYS63H, LYS90F, MET1H, MET205H, MET64H, MET81F, PHE126F, PHE136H, PHE170H, PHE57F, PHE84F, PHE93H, PRO166H, PRO2H, PRO64F, PRO66H, PRO83F, PRO87H, PRO91H, PRO92F, PRO94F, PRO95H, PRO97H, PRO98H, SER201H, SER206H, SER42F, SER48H, SER85F, SER90H, THR56H, THR92H, TYR44F, VAL127F, VAL129F, VAL135H, VAL137H, VAL35F, VAL41H, VAL52F, VAL56F, VAL59H, VAL60H, VAL62F, VAL62H, VAL7H, VAL81H, VAL86F, VAL86H
• F-I: ALA106I, ALA108F, ALA111F, ALA118I, ALA185F, ALA190F, ALA202F, ALA218F, ALA224I, ALA83I, ARG107I, ARG111I, ARG114I, ARG137F, ARG181I, ARG194F, ARG209F, ARG212F, ARG76I, ARG96F, ARG97F, ASN101I, ASN181F, ASN221I, ASN247I, ASN82I, ASP110I, ASP138I, ASP182I, ASP186F, ASP207F, ASP209I, ASP213F, ASP217I, ASP219I, ASP220I, ASP234I, ASP239I, ASP243I, ASP69F, ASP72I, ASP95F, ASP99I, GLN205F, GLN217F, GLN226I, GLN68F, GLU100F, GLU100I, GLU104I, GLU107F, GLU110F, GLU115I, GLU117I, GLU184F, GLU199F, GLU214F, GLU220F, GLU235I, GLU240I, GLU88F, GLY112I, GLY157F, GLY208F, GLY229I, GLY230I, HIS66F, ILE101F, ILE103I, ILE113I, ILE159F, ILE193F, ILE198F, ILE201F, ILE214I, ILE219F, ILE246I, ILE80I, ILE99F, LEU105I, LEU183I, LEU192F, LEU203F, LEU204F, LEU212I, LEU232I, LEU233I, LEU237I, LEU242I, LYS103F, LYS106F, LYS115F, LYS156F, LYS166F, LYS216F, LYS218I, LYS223F, LYS227I, LYS236I, MET187F, MET1I, MET206F, MET210F, MET225I, PHE109F, PHE182F, PHE189F, PHE191F, PHE238I, PRO184I, PRO188F, PRO70F, PRO71I, PRO94F, PRO98I, SER102F, SER102I, SER116I, SER200F, SER228I, SER98F, THR210I, THR211F, THR211I, THR213I, THR215I, THR216I, THR73I, TYR231I, VAL104F, VAL108I, VAL112F, VAL137I, VAL215F, VAL222I, VAL223I, VAL244I, VAL81I