3M6R

crystal structure of arabidopsis thaliana peptide deformylase 1b (atpdf1b) g41m mutant in complex with actinonin

• Total interactions analyzed: 6
• Total true interactions: 4
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 54
  • Norm. En. per Res.: -2.0747
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-35.3838	84.8376	-161.489	-112.0351	54	6	1	5769	6	24	28
A-C	0.0	0.0	-0.021	-0.021	2	0	0	5	0	4	3
B-C	-3.0451	10.7956	-17.859	-10.1085	29	0	0	932	1	29	19
C-D	0.0	0.0	-29.6302	-29.6302	50	2	1	2209	0	17	16

Interface residues

• A-B: ALA31A, ALA31B, ALA61A, ALA61B, ASN27A, ASN27B, ASN59A, ASN59B, ASP30A, ASP30B, ASP34A, ASP34B, ASP40A, ASP40B, GLU2A, GLU2B, GLU63A, GLU63B, GLU66A, GLU66B, GLU69A, GLU69B, GLY62A, GLY62B, GLY65A, GLY65B, ILE3A, ILE3B, ILE42A, ILE42B, LEU28A, LEU28B, LYS38A, LYS38B, MET1A, MET1B, MET32A, MET32B, MET36A, MET36B, MET41A, MET41B, PHE33A, PHE33B, PRO64A, PRO64B, THR39A, THR39B, TYR37A, TYR37B, VAL35A, VAL35B, VAL49A, VAL49B
• A-C: ASP82C, LYS165A
• B-C: ALA99B, ARG112C, ARG118C, ARG156B, ARG17C, ASN74C, ASP110C, ASP149B, ASP153B, ASP19C, GLN150B, GLU100B, GLU117C, GLU157B, GLU158B, GLY116C, GLY96B, ILE155B, ILE18C, ILE20C, ILE97B, LEU152B, LYS76C, LYS78C, PHE21C, SER154B, THR148B, TYR98B, VAL151B
• C-D: ALA13C, ALA61D, ARG125D, ARG12C, ASN15C, ASN52C, ASN59D, ASP82D, ASP8C, GLN105D, GLU167C, GLU168C, GLU2C, GLU66D, GLU69D, GLY171C, GLY50C, GLY62D, GLY67D, ILE10C, ILE121D, ILE130D, ILE70D, LEU123D, LEU126D, LEU172C, LEU51C, LYS108D, LYS14C, LYS169C, LYS16C, LYS68D, LYS79D, LYS83D, PHE58D, PRO127D, PRO173C, PRO175C, PRO60D, PRO9C, SER106D, SER120D, SER122D, SER124D, SER81D, THR170C, TYR166C, VAL107D, VAL4C, VAL53C