3LZF

crystal structure of fab 2d1 in complex with the 1918 influenza virus hemagglutinin

• Total interactions analyzed: 6
• Total true interactions: 4
• Strongest Interaction:
  • Chains: A-H
  • Int. Res.: 62
  • Norm. En. per Res.: -3.1391
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-217.5975	-50.9213	-46.8347	-315.3535	224	50	29	29908	6	49	40
A-H	-25.8754	4.1611	-172.907	-194.6213	62	11	0	6314	3	24	15
A-L	-39.6704	-24.2023	-84.8416	-148.7143	49	5	0	3608	2	6	4
H-L	-38.7588	-27.8886	-468.844	-535.4915	182	16	18	18558	1	18	18

Interface residues

• A-B: ALA130B, ALA19A, ALA317A, ALA35B, ALA36B, ALA44B, ALA5B, ALA65B, ALA7B, ALA96B, ARG106B, ARG109A, ARG116B, ARG153B, ARG310A, ARG315A, ARG321A, ASN104B, ASN114B, ASN117B, ASN135B, ASN20A, ASN21A, ASN28B, ASN296A, ASN322A, ASN33A, ASN41A, ASN53B, ASN60B, ASN71B, ASN72B, ASN95B, ASP101A, ASP104A, ASP109B, ASP112B, ASP11A, ASP11A5, ASP145B, ASP19B, ASP27A, ASP37B, ASP85B, ASP86B, ASP90B, CB5.98721-6.01424, CB6.6562919.46994, CB7.67481-16.78529, CB7.6783840.86929, CB9.03951-5.58584, CB9.523869.61251, CYS137B, CYS144B, CYS148B, CYS14A, CYS281A, CYS305A, GLN27B, GLN282A, GLN295A, GLN30B, GLN62B, GLU103B, GLU105B, GLU106A, GLU107A, GLU110A, GLU11B, GLU120B, GLU139B, GLU150B, GLU29B, GLU304A, GLU31A, GLU57B, GLU69B, GLU74B, GLU89A, GLU97B, GLY12B, GLY134B, GLY136B, GLY13B, GLY16A, GLY16B, GLY1B, GLY20B, GLY23B, GLY264A, GLY266A, GLY303A, GLY319A, GLY31B, GLY33B, GLY67B, GLY87B, GLY8B, HIS111B, HIS142B, HIS18A, HIS25B, HIS26B, HIS298A, HIS38A, ILE103A, ILE10B, ILE133B, ILE13A, ILE15A, ILE18B, ILE267A, ILE268A, ILE288A, ILE302A, ILE323A, ILE45B, ILE48B, ILE56B, ILE66A, ILE6B, ILE87A, ILE91B, LEU101B, LEU102B, LEU108B, LEU118B, LEU126B, LEU292A, LEU2B, LEU30A, LEU314A, LEU320A, LEU42A, LEU43A, LEU54A, LEU89B, LEU98B, LEU99B, LYS121B, LYS123B, LYS131B, LYS143B, LYS307A, LYS313A, LYS32A, LYS51B, LYS54A, LYS58B, LYS68B, LYS82B, MET149B, MET17B, MET316A, MET59B, PHE110B, PHE138B, PHE140B, PHE294A, PHE63B, PHE70B, PHE88B, PHE9B, PRO284A, PRO293A, PRO299A, PRO306A, PRO324A, SER113A, SER114A, SER151B, SER264A, SER265A, SER290A, SER291A, SER311A, SER325A, SER32B, SER39A, SER40B, THR107B, THR12A, THR15B, THR25A, THR269A, THR283A, THR28A, THR301A, THR312A, THR318A, THR35A, THR37A, THR41B, THR49B, THR61B, THR64B, THR93B, TRP14B, TRP21B, TRP92B, TYR105A, TYR119B, TYR141B, TYR17A, TYR22B, TYR24B, TYR308A, TYR34B, TYR86A, TYR94B, VAL100B, VAL115B, VAL122B, VAL152B, VAL26A, VAL29A, VAL300A, VAL309A, VAL34A, VAL36A, VAL40A, VAL52B, VAL55B, VAL66B
• A-H: ALA198A, ALA200A, ALA247A, ARG100H, ARG97H, ASN129A, ASN197A, ASP100H, ASP199A, ASP52H, ASP53H, ASP54H, ASP55H, GLN192A, GLN196A, GLU131A, GLU246A, GLY100H, GLY158A, GLY249A, GLY33H, HIS130A, ILE51H, LEU164A, LEU50H, LEU96H, LYS125A, LYS133A, LYS156A, LYS157A, LYS163A, LYS166A, MET34H, PHE245A, PRO128A, PRO162A, SER125A, SER126A, SER159A, SER160A, SER165A, SER30H, SER32H, SER35H, SER99H, THR125A, THR132A, THR133A, THR248A, THR31H, THR56H, THR95H, TRP127A, TRP52H, TYR100H, TYR161A, TYR195A, TYR201A, TYR57H, TYR58H, VAL100H, VAL98H
• A-L: ALA68L, ASN129A, ASN171A, ASN27L, ASN31L, ASN51L, ASN95L, ASP92L, ASP93L, GLU246A, GLU53L, GLY29L, GLY50L, GLY95L, ILE123A, ILE243A, ILE28L, LEU164A, LEU95L, LYS163A, LYS166A, LYS66L, PHE124A, PHE245A, PHE95L, PRO125A, PRO128A, PRO162A, SER125A, SER126A, SER165A, SER167A, SER26L, SER27L, SER30L, SER67L, SER94L, THR125A, THR242A, THR244A, THR32L, THR69L, TRP127A, TRP91L, TRP96L, TYR168A, TYR49L, VAL169A, VAL33L
• H-L: ALA125H, ALA127L, ALA130L, ALA138H, ALA139H, ALA174L, ALA175L, ALA176H, ALA43L, ALA44H, ALA49H, ALA89L, ALA90L, ALA93H, ARG100H, ARG105H, ARG222H, ARG38H, ARG54L, ARG94H, ARG97H, ASN170L, ASN31L, ASN51L, ASN52L, ASN95L, ASP100H, ASP101H, ASP138L, ASP146H, ASP85L, ASP92L, ASP93L, CYS134L, CYS142H, CYS88L, CYS92H, GLN126L, GLN167L, GLN179H, GLN37L, GLN38L, GLN39H, GLN6L, GLU123L, GLU124L, GLU160L, GLU46H, GLU53L, GLU6H, GLY100L, GLY101L, GLY104H, GLY106H, GLY141H, GLY183H, GLY41L, GLY42H, GLY50L, GLY95L, GLY99L, HIS172H, ILE136L, ILE37H, ILE48L, ILE59H, LEU102H, LEU117L, LEU124H, LEU125L, LEU132L, LEU135L, LEU140H, LEU143H, LEU178H, LEU179L, LEU181L, LEU184H, LEU187H, LEU45H, LEU46L, LEU47L, LEU48H, LEU50H, LEU95L, LEU96H, LYS103L, LYS129L, LYS145H, LYS166L, LYS172L, LYS221H, LYS43H, LYS45L, LYS64H, PHE100H, PHE118L, PHE122H, PHE139L, PHE174H, PHE95L, PHE98L, PRO119L, PRO120L, PRO123H, PRO126H, PRO164L, PRO175H, PRO2L, PRO40H, PRO40L, PRO41H, PRO44L, PRO55L, SER114L, SER120H, SER121L, SER122L, SER137L, SER165L, SER168L, SER176L, SER177L, SER180H, SER180L, SER182H, SER186H, SER188H, SER189H, SER34L, SER35H, SER56L, SER62H, SER94L, THR102L, THR116L, THR131L, THR161L, THR162L, THR163L, THR173H, THR192H, THR32L, THR42L, THR56H, THR60H, THR89H, THR95H, TRP103H, TRP35L, TRP36H, TRP47H, TRP91L, TRP96L, TYR100H, TYR173L, TYR178L, TYR185H, TYR36L, TYR49L, TYR57H, TYR58H, TYR61H, TYR86L, TYR87L, TYR91H, VAL100H, VAL115L, VAL121H, VAL133L, VAL144H, VAL159L, VAL171H, VAL177H, VAL190H, VAL191H, VAL223H, VAL33L, VAL39L, VAL3L, VAL97L, VAL98H