3LYV

crystal structure of a domain of ribosome-associated factor y from streptococcus pyogenes serotype m6. northeast structural genomics consortium target id dr64a

• Total interactions analyzed: 15
• Total true interactions: 11
• Strongest Interaction:
  • Chains: B-F
  • Int. Res.: 29
  • Norm. En. per Res.: -5.2811
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-10.6141	13.9947	-81.1388	-77.7582	40	4	0	3265	2	23	24
A-C	0.0	23.8475	-5.9412	17.9063	11	0	0	149	0	2	20
A-D	0.0	3.7741	-0.1044	3.6697	6	0	0	40	0	6	8
A-E	0.0	-57.8898	-15.146	-73.0358	28	3	2	1243	3	9	2
A-F	0.0	0.0	-0.6271	-0.6271	7	0	0	115	0	3	0
B-C	-11.7883	4.5545	-4.2253	-11.4592	15	1	0	194	1	9	15
B-F	-13.1094	-87.4693	-52.5733	-153.152	29	2	1	2268	5	14	4
C-D	-17.4854	-2.1602	-79.2238	-98.8694	39	4	0	3236	2	22	25
C-E	0.0	0.0	-18.0814	-18.0814	13	0	0	614	0	5	1
C-F	-51.9833	31.5547	-270.644	-291.0726	82	17	21	12727	1	21	22
D-E	-52.3355	21.8103	-183.948	-214.4732	64	21	14	8705	0	21	19

Interface residues

• A-B: ALA19A, ALA19B, ARG20A, ARG20B, ARG46B, ARG47B, ASN51B, ASP15A, ASP29B, ASP35A, ASP38A, ASP49B, GLN22A, GLN22B, GLU17A, GLU17B, GLU18A, GLU24A, GLU24B, GLU37A, GLU48B, GLY27B, GLY39A, GLY50B, HIS28B, LEU21A, LEU21B, LEU25A, LEU25B, LEU26A, LEU26B, LEU44B, LEU52B, LYS12A, PHE31A, PRO13A, SER36A, THR34A, TYR33A, VAL16A
• A-C: ARG20C, ASP15A, ASP15C, ASP38A, GLU17A, GLU17C, GLU37A, GLU37C, SER36A, SER36C, VAL16C
• A-D: ARG47D, ASN51D, ASP38A, ASP49D, GLU37A, GLU56A
• A-E: ALA40A, ARG20A, ARG5E, ASN42A, ASN8E, ASP15A, ASP35A, ASP38A, GLN2E, GLU17A, GLU37A, GLU56A, GLY39A, ILE43A, ILE55A, LEU44A, LEU52A, LEU54A, LYS58A, LYS7E, SER36A, THR34A, THR41A, THR6E, TYR33A, VAL16A, VAL3E, VAL4E
• A-F: ARG20A, GLN2F, GLU17A, GLU18A, LEU21A, VAL3F, VAL4F
• B-C: ARG47B, ARG47C, ASN51B, ASN51C, ASP15B, ASP38C, ASP49B, ASP49C, GLU37B, GLU37C, GLY53C, LYS58B, LYS58C, SER36B, TYR45C
• B-F: ALA19B, ALA40B, ARG20B, ARG5F, ASN42B, ASN8F, ASP15B, ASP35B, ASP38B, GLN2F, GLU17B, GLU18B, GLU37B, GLU56B, GLY39B, GLY53B, ILE55B, LEU21B, LEU44B, LEU52B, LEU54B, LYS58B, LYS7F, SER36B, THR6F, TYR33B, VAL16B, VAL3F, VAL4F
• C-D: ALA19C, ALA19D, ARG20C, ARG20D, ARG46D, ARG47D, ASN51D, ASP15C, ASP29D, ASP35C, ASP38C, ASP49D, GLN22C, GLN22D, GLU17C, GLU17D, GLU18C, GLU24C, GLU24D, GLU37C, GLU48D, GLY27D, GLY39C, GLY50D, HIS28D, LEU21C, LEU21D, LEU25C, LEU25D, LEU26D, LEU44D, LEU52D, LYS12C, PHE31C, PRO13C, SER36C, THR34C, TYR33C, VAL16C
• C-E: ALA19C, ARG20C, ARG47E, ASP15C, GLN22C, GLN2E, GLU17C, GLU18C, LEU21C, LYS12C, SER36C, VAL16C, VAL3E
• C-F: ALA40C, ALA57C, ALA57F, ARG20C, ARG20F, ARG46C, ARG46F, ARG47C, ARG47F, ARG5C, ARG5F, ASN42C, ASN42F, ASN51C, ASN51F, ASN8C, ASN8F, ASP15F, ASP29C, ASP29F, ASP35C, ASP38C, ASP49C, GLN2C, GLN2F, GLU17C, GLU17F, GLU48C, GLU56C, GLU56F, GLY27C, GLY27F, GLY50C, GLY50F, GLY53C, GLY53F, HIS28C, HIS28F, ILE32C, ILE32F, ILE43C, ILE43F, ILE55C, ILE55F, LEU11C, LEU11F, LEU26C, LEU26F, LEU44C, LEU44F, LEU52C, LEU52F, LEU54C, LEU54F, LEU59C, LYS12F, LYS58C, LYS7C, LYS7F, PHE30C, PHE30F, PHE31C, PHE31F, THR10C, THR10F, THR34F, THR41C, THR41F, THR6C, THR6F, TYR33C, TYR33F, TYR45C, TYR45F, VAL16C, VAL16F, VAL3C, VAL3F, VAL4C, VAL4F, VAL9C, VAL9F
• D-E: ALA19D, ALA40D, ALA57D, ARG20D, ARG46D, ARG46E, ARG47D, ARG47E, ARG5E, ASN42D, ASN42E, ASN51D, ASN8E, ASP29D, ASP29E, GLN2E, GLU17D, GLU24D, GLU48D, GLU48E, GLU56D, GLU56E, GLY27D, GLY27E, GLY50D, GLY53D, GLY53E, HIS28D, HIS28E, ILE32D, ILE32E, ILE43D, ILE43E, ILE55D, ILE55E, LEU11D, LEU11E, LEU26D, LEU26E, LEU44D, LEU44E, LEU52D, LEU54D, LYS12E, LYS58D, LYS7E, PHE30D, PHE30E, PHE31D, PHE31E, THR10D, THR10E, THR34E, THR41D, THR41E, THR6E, TYR33D, TYR33E, TYR45D, TYR45E, VAL16D, VAL3E, VAL4E, VAL9E