3LYF

crystal structure of the rift valley fever virus nucleocapsid protein

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: B-C
  • Int. Res.: 35
  • Norm. En. per Res.: -3.5311
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-3.0328	19.1351	-101.034	-84.9317	83	5	4	5336	0	15	15
A-C	-2.7191	-21.382	-21.4015	-45.5026	14	0	0	757	3	16	13
A-D	-17.8166	-9.8083	-74.1235	-101.7484	36	1	1	2852	0	17	16
B-C	-20.4336	-24.0888	-79.0649	-123.5873	35	3	1	3053	1	15	15
C-D	0.0	20.404	-108.621	-88.217	83	2	4	5490	0	14	12

Interface residues

• A-B: ALA118A, ALA118B, ALA12A, ALA12B, ALA139A, ALA139B, ALA13A, ALA13B, ALA15A, ALA15B, ALA233A, ALA233B, ALA8A, ALA8B, ARG142A, ARG142B, ARG64A, ARG64B, ASP134A, ASP134B, ASP2A, ASP2B, GLN10A, GLN10B, GLN117A, GLN117B, GLN14A, GLN14B, GLN5A, GLN5B, GLU124A, GLU124B, GLU20A, GLU20B, GLU6A, GLU6B, GLU78A, GLU78B, GLY130A, GLY130B, GLY79A, HIS143A, HIS143B, ILE9A, ILE9B, LEU119A, LEU119B, LEU122A, LEU122B, LEU126A, LEU126B, LYS77A, LYS77B, MET1A, MET1B, PHE11A, PHE11B, PRO127A, PRO127B, SER123A, SER123B, SER76A, SER76B, THR129A, THR129B, THR131A, THR131B, THR132A, THR132B, THR63A, THR63B, TRP125A, TRP125B, TYR4A, TYR4B, VAL120A, VAL120B, VAL121A, VAL121B, VAL128A, VAL128B, VAL16A, VAL16B
• A-C: ALA220A, ASN227A, ASP225A, ASP225C, GLU212A, GLU212C, GLU216A, GLU216C, LYS213A, LYS213C, LYS219A, LYS219C, SER226A, SER226C
• A-D: ALA240D, ALA244D, ALA245D, ALA48A, ARG178D, ARG185D, ARG187D, ASN183D, ASP49A, ASP53A, GLN175D, GLN44A, GLU190D, GLU191D, GLU40A, GLU51A, GLY186D, GLY46A, GLY47A, ILE39A, LEU136D, LEU174D, LEU184D, LEU42A, LYS189D, LYS43A, LYS52A, LYS89A, LYS91A, PRO182D, THR188D, THR243D, TRP50A, TYR45A, TYR90A, VAL192D
• B-C: ALA244B, ALA245B, ALA48C, ARG178B, ARG185B, ARG187B, ASN183B, ASP49C, ASP53C, GLN175B, GLN44C, GLU190B, GLU191B, GLU40C, GLU51C, GLY186B, GLY46C, GLY47C, ILE39C, LEU136B, LEU174B, LEU184B, LEU42C, LYS189B, LYS43C, LYS52C, LYS89C, LYS91C, PRO182B, THR188B, THR243B, TRP50C, TYR45C, TYR90C, VAL192B
• C-D: ALA118C, ALA118D, ALA12C, ALA12D, ALA139C, ALA139D, ALA13C, ALA13D, ALA15C, ALA15D, ALA233C, ALA233D, ALA8C, ALA8D, ARG142C, ARG142D, ARG64C, ARG64D, ASP134C, ASP134D, ASP2C, ASP2D, GLN10C, GLN10D, GLN117C, GLN117D, GLN14C, GLN14D, GLN5C, GLN5D, GLU124C, GLU124D, GLU6C, GLU6D, GLU78C, GLU78D, GLY130C, GLY130D, GLY79D, HIS143C, HIS143D, ILE9C, ILE9D, LEU119C, LEU119D, LEU122C, LEU122D, LEU126C, LEU126D, LEU62C, LYS74C, LYS77C, LYS77D, MET1C, MET1D, PHE11C, PHE11D, PRO127C, PRO127D, SER123C, SER123D, SER76C, SER76D, THR129C, THR129D, THR131C, THR131D, THR132C, THR132D, THR63C, THR63D, TRP125C, TRP125D, TRP24C, TRP24D, TYR4C, TYR4D, VAL120C, VAL120D, VAL121C, VAL121D, VAL128C, VAL128D