3LU0

molecular model of escherichia coli core rna polymerase

• Total interactions analyzed: 10
• Total true interactions: 9
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 677
  • Norm. En. per Res.: -3.1227
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	11.2509	-317.3	-306.0491	149	26	21	16645	0	39	39
A-C	-20.5729	-60.2764	-458.75	-539.5993	192	33	10	19802	8	86	79
A-D	0.0	0.0	-0.4057	-0.4057	14	0	0	96	0	3	2
B-C	-12.6349	-47.1088	-53.1438	-112.8875	38	2	0	2540	0	17	15
B-D	-13.8286	-17.8956	-330.313	-362.0372	163	20	7	14892	4	66	68
B-E	0.0	0.0	-0.7571	-0.7571	6	0	0	124	0	4	1
C-D	-121.1556	8.5951	-2001.51	-2114.0705	677	125	60	87126	6	210	212
C-E	-4.2414	9.5281	-22.2902	-17.0035	32	11	0	1461	2	4	8
D-E	-38.644	-43.6672	133.428	51.1168	169	184	16	22657	5	70	59

Interface residues

• A-B: ALA220A, ALA220B, ALA221A, ALA221B, ALA225A, ALA225B, ALA230A, ALA230B, ALA42A, ALA42B, ARG12A, ARG12B, ARG148A, ARG148B, ARG150A, ARG150B, ARG158B, ARG195A, ARG218A, ARG218B, ARG219B, ARG235A, ARG235B, ARG33A, ARG33B, ARG44B, ARG45A, ARG45B, ASN41A, ASN41B, ASP15A, ASP15B, ASP197A, ASP199A, ASP199B, ASP233A, ASP233B, GLN194A, GLN227A, GLN227B, GLU17A, GLU17B, GLU214A, GLU214B, GLU215B, GLU226A, GLU226B, GLU229A, GLU229B, GLU29A, GLU32A, GLU32B, GLU7A, GLU7B, GLY149A, GLY149B, GLY151B, GLY34A, GLY34B, GLY36A, GLY36B, GLY3A, GLY40A, GLY40B, HIS37A, HIS37B, ILE16A, ILE16B, ILE203A, ILE203B, ILE217A, ILE217B, ILE223A, ILE223B, ILE46A, ILE46B, LEU13A, LEU13B, LEU198A, LEU201A, LEU201B, LEU224A, LEU224B, LEU228A, LEU228B, LEU234A, LEU234B, LEU28A, LEU28B, LEU31A, LEU31B, LEU39A, LEU39B, LEU43A, LEU43B, LEU47B, LEU48A, LEU48B, LEU9B, LYS10A, LYS10B, MET1B, MET205A, MET51A, MET51B, PHE231A, PHE231B, PHE35A, PHE35B, PHE8A, PHE8B, PRO11A, PRO11B, PRO154B, PRO30A, PRO30B, PRO52A, PRO52B, SER178B, SER49A, SER49B, SER4A, SER4B, SER50A, SER50B, THR157B, THR222A, THR222B, THR27A, THR27B, THR38A, THR38B, THR6A, THR6B, TYR152A, TYR152B, TYR177B, VAL14A, VAL14B, VAL153B, VAL187A, VAL202A, VAL202B, VAL232A, VAL232B, VAL26A, VAL26B, VAL5A, VAL5B
• A-C: ALA1055C, ALA138A, ALA155A, ALA175A, ALA184A, ALA42A, ALA695C, ALA729C, ALA784C, ALA875C, ARG1058C, ARG1059C, ARG1216C, ARG158A, ARG166A, ARG170A, ARG182A, ARG44A, ARG45A, ARG694C, ARG731C, ARG801C, ARG821C, ARG827C, ASN1090C, ASN137A, ASN186A, ASN208A, ASN41A, ASN766C, ASN84A, ASP1084C, ASP1088C, ASP1214C, ASP135A, ASP164A, ASP174A, ASP728C, ASP77A, ASP785C, ASP826C, ASP930C, CYS176A, CYS764C, CYS770C, GLN1061C, GLN1220C, GLN725C, GLN75A, GLN767C, GLN798C, GLN824C, GLU1083C, GLU1089C, GLU1219C, GLU136A, GLU165A, GLU181A, GLU204A, GLU206A, GLU58A, GLU67A, GLU72A, GLU76A, GLU80A, GLU820C, GLU825C, GLU876C, GLU962C, GLU963C, GLY106A, GLY108A, GLY1091C, GLY1215C, GLY1218C, GLY151A, GLY169A, GLY34A, GLY40A, GLY73A, GLY774C, GLY874C, GLY87A, GLY923C, GLY926C, HIS128A, HIS132A, HIS160A, HIS37A, HIS66A, HIS832C, ILE1060C, ILE1079C, ILE107A, ILE1082C, ILE159A, ILE168A, ILE183A, ILE46A, ILE732C, ILE78A, ILE81A, ILE831C, ILE833C, ILE873C, ILE929C, ILE966C, LEU1054C, LEU1212C, LEU133A, LEU171A, LEU172A, LEU47A, LEU48A, LEU65A, LEU693C, LEU753C, LEU773C, LEU783C, LEU79A, LEU82A, LEU83A, LYS1028C, LYS1057C, LYS125A, LYS71A, LYS755C, LYS864C, LYS86A, MET1085C, MET768C, PHE828C, PRO1081C, PRO1086C, PRO1093C, PRO154A, PRO167A, PRO179A, PRO769C, SER156A, SER161A, SER178A, SER49A, SER50A, SER69A, SER730C, SER772C, SER863C, SER925C, THR1092C, THR1217C, THR134A, THR157A, THR38A, THR692C, THR70A, THR754C, THR829C, THR830C, THR878C, THR927C, TRP807C, TYR1087C, TYR1213C, TYR1229C, TYR152A, TYR177A, TYR185A, TYR68A, TYR726C, TYR756C, TYR872C, VAL1056C, VAL1094C, VAL129A, VAL153A, VAL173A, VAL180A, VAL187A, VAL202A, VAL64A, VAL724C, VAL727C, VAL733C, VAL74A, VAL771C, VAL822C, VAL823C, VAL871C, VAL877C, VAL928C, VAL931C
• A-D: ALA406D, ARG33A, GLU404D, GLU443D, GLY34A, HIS37A, LYS371D, LYS566D, PRO154A, SER156A, SER568D, THR157A, THR567D, TRP409D
• B-C: ALA42B, ARG1216C, ARG195B, ARG33B, ARG44B, ARG45B, ASN1080C, ASN41B, ASN808C, ASP1084C, ASP1214C, ASP197B, ASP199B, GLN1220C, GLU1083C, GLU1219C, GLU32B, GLU820C, GLY1215C, GLY1218C, GLY34B, GLY36B, HIS37B, ILE1079C, LEU198B, LYS1078C, MET1085C, PHE35B, PRO1062C, PRO1081C, THR1217C, THR38B, TRP807C, TYR185B, TYR810C, VAL187B, VAL818C, VAL823C
• B-D: ALA155B, ALA175B, ALA184B, ALA189B, ALA190B, ALA533D, ALA542D, ALA559D, ALA55B, ALA565D, ALA577D, ALA630D, ARG150B, ARG158B, ARG170B, ARG182B, ARG191B, ARG195B, ARG33B, ARG362D, ARG388D, ARG417D, ARG44B, ARG45B, ARG535D, ARG538D, ARG634D, ASN186B, ASN208B, ASN41B, ASN560D, ASN84B, ASP164B, ASP174B, ASP197B, ASP199B, ASP410D, ASP413D, ASP558D, ASP622D, ASP77B, CYS176B, GLN194B, GLN365D, GLN448D, GLN623D, GLU181B, GLU188B, GLU193B, GLU204B, GLU206B, GLU414D, GLU418D, GLU438D, GLU443D, GLU532D, GLU534D, GLU554D, GLU556D, GLU562D, GLU58B, GLU67B, GLU80B, GLY151B, GLY367D, GLY36B, GLY529D, GLY540D, GLY561D, GLY586D, GLY87B, HIS128B, HIS23B, HIS37B, HIS419D, HIS66B, ILE159B, ILE168B, ILE183B, ILE411D, ILE416D, ILE442D, ILE578D, ILE582D, ILE619D, ILE78B, LEU171B, LEU172B, LEU198B, LEU201B, LEU361D, LEU368D, LEU412D, LEU441D, LEU47B, LEU48B, LEU527D, LEU536D, LEU541D, LEU563D, LEU569D, LEU579D, LEU65B, LEU79B, LEU82B, LEU83B, LEU85B, LEU88B, LYS200B, LYS25B, LYS370D, LYS531D, LYS557D, LYS566D, LYS570D, LYS585D, LYS86B, MET581D, MET625D, PRO154B, PRO179B, PRO359D, PRO439D, PRO530D, PRO584D, SER156B, SER178B, SER49B, SER539D, SER543D, SER568D, SER69B, THR157B, THR196B, THR207B, THR22B, THR567D, THR57B, THR627D, THR70B, TRP409D, TRP580D, TYR152B, TYR177B, TYR185B, TYR360D, TYR537D, TYR555D, TYR626D, TYR631D, TYR68B, VAL153B, VAL173B, VAL180B, VAL187B, VAL192B, VAL202B, VAL415D, VAL440D, VAL564D, VAL56B, VAL574D, VAL583D
• B-E: ARG191B, GLU193B, THR46E, THR47E, VAL192B, VAL48E
• C-D: ALA1067C, ALA112D, ALA1190C, ALA1193C, ALA1245C, ALA1277C, ALA1280C, ALA1283C, ALA1284C, ALA1323D, ALA1335D, ALA1336D, ALA1359D, ALA19D, ALA23D, ALA25D, ALA261D, ALA328D, ALA373D, ALA397D, ALA426D, ALA436D, ALA446D, ALA455D, ALA456D, ALA459D, ALA467D, ALA476D, ALA480D, ALA482D, ALA543C, ALA617C, ALA619C, ALA630D, ALA632D, ALA633D, ALA637D, ALA665C, ALA676C, ALA679C, ALA726D, ALA730D, ALA735D, ALA761D, ALA779D, ALA784D, ALA787D, ALA791D, ALA803C, ALA904D, ALA914D, ALA919D, ALA920D, ARG101D, ARG1058C, ARG1059C, ARG1106C, ARG1148D, ARG1149D, ARG1194D, ARG1216C, ARG1223C, ARG1246C, ARG1269C, ARG1301C, ARG1331C, ARG1341D, ARG1355D, ARG250D, ARG259D, ARG337D, ARG339D, ARG346D, ARG352D, ARG403D, ARG425D, ARG431D, ARG451C, ARG47D, ARG481D, ARG542C, ARG548C, ARG557C, ARG634D, ARG637C, ARG678C, ARG731D, ARG738D, ARG744D, ARG764D, ARG780D, ARG798D, ARG799D, ARG841C, ARG919C, ARG933D, ARG99D, ASN1072C, ASN1080C, ASN1099C, ASN1108C, ASN1299C, ASN1307C, ASN1312C, ASN1324C, ASN1336C, ASN1350D, ASN232D, ASN266D, ASN341D, ASN424D, ASN45D, ASN488D, ASN489D, ASN568C, ASN573C, ASN620C, ASN677C, ASN684C, ASN720D, ASN762D, ASN768D, ASN792D, ASN808C, ASN811C, ASN856C, ASN922C, ASP1064C, ASP1084C, ASP1188C, ASP1214C, ASP1240C, ASP1241C, ASP1296C, ASP1297C, ASP1310C, ASP1341C, ASP1342D, ASP18D, ASP248D, ASP256D, ASP264D, ASP304D, ASP308D, ASP329D, ASP348D, ASP446C, ASP460D, ASP462D, ASP464D, ASP505D, ASP549C, ASP642D, ASP643D, ASP654C, ASP674C, ASP675C, ASP727D, ASP751D, ASP785D, ASP802D, ASP806D, ASP814C, ASP842C, ASP881C, CYS454D, CYS517D, CYS559C, CYS636C, GLN1061C, GLN1111C, GLN1209C, GLN1220C, GLN1256C, GLN1257C, GLN1264C, GLN1268C, GLN1288C, GLN1314C, GLN1367D, GLN340D, GLN435D, GLN448D, GLN465D, GLN477D, GLN504D, GLN618C, GLN658C, GLN659C, GLN665D, GLN688C, GLN736D, GLN739D, GLN771D, GLN805D, GLN894C, GLN921D, GLU100D, GLU1114C, GLU1192C, GLU1219C, GLU1222C, GLU1272C, GLU1274C, GLU1279C, GLU1289C, GLU1316C, GLU1321C, GLU1329C, GLU1334D, GLU1338C, GLU1340C, GLU1342C, GLU1349D, GLU15D, GLU16D, GLU375D, GLU386D, GLU402D, GLU404D, GLU443D, GLU475D, GLU479D, GLU541C, GLU546C, GLU562C, GLU565C, GLU641C, GLU672C, GLU756D, GLU765D, GLU813C, GLU848C, GLU892C, GLU913D, GLY103D, GLY1063C, GLY1074C, GLY1102C, GLY1110C, GLY1189C, GLY1208C, GLY1215C, GLY1218C, GLY1249C, GLY1260C, GLY1261C, GLY1266C, GLY1267C, GLY1271C, GLY1282C, GLY1300C, GLY1311C, GLY1318C, GLY1334C, GLY1346D, GLY1354D, GLY1360D, GLY1362D, GLY257D, GLY258D, GLY344D, GLY351D, GLY358D, GLY383D, GLY433D, GLY444D, GLY463D, GLY509D, GLY544C, GLY556C, GLY566C, GLY570C, GLY628D, GLY636D, GLY640C, GLY640D, GLY729D, GLY732D, GLY766D, GLY778D, GLY782D, GLY794D, GLY809C, GLY879C, GLY880C, GLY912D, GLY916D, GLY923C, HIS1116C, HIS113D, HIS1237C, HIS1244C, HIS1313C, HIS1366D, HIS165C, HIS419D, HIS430D, HIS469D, HIS551C, HIS554C, HIS673C, HIS777D, HIS936D, ILE1060C, ILE1076C, ILE1079C, ILE1109C, ILE1112C, ILE114D, ILE1195C, ILE1210C, ILE1308C, ILE1320D, ILE1330C, ILE1335C, ILE1337C, ILE1352D, ILE1357D, ILE20D, ILE22D, ILE238D, ILE30D, ILE331D, ILE355D, ILE381D, ILE394D, ILE434D, ILE442D, ILE447D, ILE561C, ILE569C, ILE572C, ILE616C, ILE641D, ILE646D, ILE668C, ILE722D, ILE737D, ILE755D, ILE759D, ILE774D, ILE816C, ILE915D, ILE918D, LEU1098C, LEU1101C, LEU1113C, LEU1199C, LEU1212C, LEU1235C, LEU1238C, LEU1253C, LEU1259C, LEU1278C, LEU1287C, LEU1291C, LEU1326C, LEU1327C, LEU1332D, LEU1333C, LEU1339C, LEU1344D, LEU1347D, LEU1356D, LEU239D, LEU242D, LEU245D, LEU249D, LEU24D, LEU252D, LEU255D, LEU265D, LEU306D, LEU307D, LEU327D, LEU342D, LEU343D, LEU361D, LEU368D, LEU374D, LEU376D, LEU385D, LEU387D, LEU422D, LEU423D, LEU429D, LEU432D, LEU448C, LEU449D, LEU452D, LEU472D, LEU474D, LEU478D, LEU483D, LEU508D, LEU571C, LEU644C, LEU671C, LEU680C, LEU740D, LEU767D, LEU770D, LEU783D, LEU788D, LEU796D, LEU800D, LEU817C, LEU845C, LEU903D, LYS1057C, LYS1065C, LYS1073C, LYS1078C, LYS1151D, LYS1172D, LYS1191C, LYS1192D, LYS1196C, LYS1242C, LYS1294C, LYS1303C, LYS1306C, LYS1328C, LYS1348D, LYS163C, LYS169C, LYS21D, LYS325D, LYS345D, LYS370D, LYS371D, LYS378D, LYS384D, LYS395D, LYS398D, LYS399D, LYS445D, LYS566D, LYS650D, LYS749D, LYS781D, LYS789D, LYS844C, LYS886C, LYS900C, LYS914C, LYS96D, MET102D, MET1066C, MET1107C, MET1243C, MET1273C, MET1290C, MET1304C, MET1315C, MET1319C, MET237D, MET29D, MET330D, MET372D, MET466D, MET484D, MET485D, MET513D, MET625D, MET644D, MET681C, MET685C, MET724D, MET725D, MET747D, MET805C, MET932D, PHE116D, PHE1187C, PHE1221C, PHE1265C, PHE1270C, PHE1319D, PHE1323C, PHE17D, PHE260D, PHE338D, PHE377D, PHE380D, PHE461D, PHE49D, PHE545C, PHE629D, PHE62D, PHE670C, PHE719D, PHE763D, PHE773D, PHE804C, PHE812C, PHE935D, PRO1062C, PRO1086C, PRO1100C, PRO1104C, PRO1150D, PRO1153D, PRO1191D, PRO1224C, PRO1258C, PRO1317C, PRO1320C, PRO1358D, PRO243D, PRO246D, PRO247D, PRO251D, PRO254D, PRO359D, PRO369D, PRO379D, PRO427D, PRO451D, PRO471D, PRO493D, PRO502D, PRO552C, PRO560C, PRO564C, PRO567C, PRO750D, PRO758D, PRO806C, PRO889C, PRO897C, PRO921C, SER1077C, SER1105C, SER1207C, SER1247C, SER1250C, SER1252C, SER1295C, SER1322C, SER1324D, SER1332C, SER166C, SER167C, SER263D, SER26D, SER326D, SER34D, SER350D, SER353D, SER486D, SER503D, SER568D, SER574C, SER635D, SER638C, SER638D, SER642C, SER643C, SER656C, SER721D, SER728D, SER733D, SER775D, SER793D, SER815C, SER925C, THR1115C, THR111D, THR1206C, THR1217C, THR1226C, THR1248C, THR1255C, THR1286C, THR1292C, THR1328D, THR1333D, THR1361D, THR14D, THR164C, THR240D, THR262D, THR356D, THR428D, THR473D, THR48D, THR553C, THR563C, THR627D, THR635C, THR657C, THR757D, THR760D, THR776D, THR786D, THR790D, THR797D, THR843C, THR878C, THR888C, THR893C, THR931D, THR934D, TRP115D, TRP1193D, TRP1276C, TRP236D, TRP33D, TRP807C, TYR1251C, TYR1281C, TYR1285C, TYR1305C, TYR1363D, TYR269D, TYR349D, TYR360D, TYR382D, TYR457D, TYR46D, TYR512D, TYR555C, TYR626D, TYR631D, TYR723D, TYR772D, TYR795D, TYR810C, VAL1056C, VAL1075C, VAL1097C, VAL1103C, VAL1186C, VAL1225C, VAL1227C, VAL1239C, VAL1254C, VAL1275C, VAL1293C, VAL1298C, VAL1309C, VAL1325C, VAL1331D, VAL1337D, VAL1351D, VAL1353D, VAL170C, VAL241D, VAL244D, VAL253D, VAL303D, VAL347D, VAL354D, VAL357D, VAL401D, VAL415D, VAL468D, VAL470D, VAL501D, VAL506D, VAL507D, VAL547C, VAL550C, VAL558C, VAL639D, VAL645D, VAL660C, VAL661C, VAL661D, VAL717D, VAL769D, VAL801D, VAL917D, VAL920C, VAL924C
• C-E: ALA1280C, ALA1283C, ALA1284C, ALA24E, ALA27E, ARG16E, ARG25E, ARG28E, ARG90E, ASN1307C, ASN1312C, ASP1310C, GLN1314C, GLN29E, GLN31E, GLN72E, GLU1316C, GLU1342C, GLU88E, GLY1282C, GLY1311C, GLY89E, HIS1313C, LEU21E, MET1315C, PHE17E, PRO1317C, TYR1281C, TYR1285C, VAL1309C, VAL20E, VAL32E
• D-E: ALA1359D, ALA1364D, ALA1374D, ALA1375D, ALA1378D, ALA1380D, ALA1381D, ALA1386D, ALA23E, ALA24E, ALA27E, ALA2E, ALA476D, ALA480D, ALA482D, ALA50E, ALA621D, ALA77E, ALA78E, ALA82E, ALA85E, ALA904D, ALA914D, ALA9E, ARG1369D, ARG1371D, ARG1372D, ARG1373D, ARG16E, ARG25E, ARG26E, ARG28E, ARG362D, ARG388D, ARG3E, ARG417D, ARG431D, ARG481D, ARG52E, ARG610D, ARG67E, ARG69E, ARG905D, ARG90E, ASN15E, ASN488D, ASN489D, ASN60E, ASN61E, ASN910D, ASP1368D, ASP18E, ASP36E, ASP413D, ASP44E, ASP622D, ASP65E, ASP8E, GLN1367D, GLN1383D, GLN29E, GLN31E, GLN477D, GLN62E, GLN73E, GLN75E, GLN7E, GLN81E, GLU11E, GLU1377D, GLU1387D, GLU16D, GLU386D, GLU414D, GLU418D, GLU475D, GLU479D, GLU53E, GLU55E, GLU56E, GLU68E, GLU74E, GLU76E, GLU79E, GLU913D, GLY1360D, GLY1362D, GLY1376D, GLY14E, GLY33E, GLY34E, GLY57E, GLY613D, GLY906D, GLY912D, HIS1366D, HIS364D, HIS419D, HIS907D, ILE1357D, ILE13E, ILE490D, ILE49E, ILE54E, ILE59E, ILE611D, ILE619D, ILE63E, ILE86E, ILE908D, ILE909D, LEU1356D, LEU19E, LEU21E, LEU363D, LEU38E, LEU474D, LEU478D, LEU483D, LEU491D, LEU51E, LEU58E, LEU612D, LEU614D, LEU64E, LEU80E, LEU903D, LYS35E, LYS384D, LYS45E, LYS615D, LYS911D, MET1370D, MET30E, MET484D, MET485D, PHE17E, PHE620D, PRO1379D, PRO1382D, PRO37E, PRO40E, PRO420D, PRO616D, SER486D, THR1361D, THR14D, THR46E, THR473D, THR47E, THR487D, THR5E, THR617D, THR84E, TYR1363D, TYR1365D, TYR609D, VAL10E, VAL20E, VAL22E, VAL32E, VAL415D, VAL48E, VAL4E, VAL618D, VAL66E, VAL6E, VAL809D, VAL83E