3LOC

crystal structure of putative transcriptional regulator ycdc

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 173
  • Norm. En. per Res.: -2.9891
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-36.9031	16.7485	-487.448	-507.6026	179	21	18	20492	0	28	39
A-D	0.0	0.0	-0.0289	-0.0289	4	0	0	15	0	2	0
B-C	0.0	0.0	-0.0004	-0.0004	2	0	0	1	0	1	1
B-D	-11.0074	-16.4676	-47.9018	-75.3768	47	1	1	2405	4	20	17
C-D	-33.2304	3.2101	-487.089	-517.1093	173	9	19	20458	0	28	40

Interface residues

• A-B: ALA120A, ALA120B, ALA122A, ALA122B, ALA135A, ALA135B, ALA154A, ALA154B, ALA167A, ALA167B, ALA173A, ALA173B, ALA176A, ALA176B, ALA181A, ALA181B, ALA185A, ALA185B, ARG112A, ARG112B, ARG202A, ARG202B, ARG209A, ARG209B, ARG211A, ARG211B, ASN194A, ASN194B, ASN199A, ASN199B, ASP127A, ASP127B, ASP132B, ASP138A, ASP138B, ASP157A, ASP157B, ASP174A, ASP174B, CYS115A, CYS115B, GLN109A, GLN109B, GLN159A, GLN159B, GLN170A, GLN170B, GLN178A, GLN178B, GLN195A, GLN195B, GLN201A, GLN201B, GLN32A, GLN32B, GLU117A, GLU117B, GLU128A, GLU128B, GLU180A, GLU180B, GLU198A, GLU198B, GLU206A, GLU206B, GLY121A, GLY121B, GLY131A, GLY131B, GLY184A, GLY184B, GLY207A, GLY207B, HIS160A, HIS160B, HIS171A, HIS171B, HIS36B, ILE137A, ILE137B, ILE156A, ILE156B, ILE162A, ILE162B, ILE165A, ILE165B, ILE203A, ILE203B, ILE204A, ILE204B, ILE205A, ILE205B, ILE208A, ILE208B, ILE93A, ILE93B, ILE97A, ILE97B, LEU101A, LEU101B, LEU113A, LEU113B, LEU119A, LEU119B, LEU125A, LEU125B, LEU129A, LEU129B, LEU133A, LEU133B, LEU136A, LEU136B, LEU153A, LEU161A, LEU161B, LEU187A, LEU187B, LEU73A, LEU73B, LEU77A, LEU77B, LYS100A, LYS100B, LYS134A, LYS134B, PHE114A, PHE114B, PHE163A, PHE163B, PHE175A, PHE175B, PHE192A, PHE192B, PHE193A, PHE193B, PHE33A, PRO108A, PRO108B, PRO123A, PRO123B, PRO155A, PRO155B, PRO158A, PRO158B, PRO177A, PRO177B, PRO210A, SER111A, SER111B, SER141A, SER141B, SER168A, SER168B, SER31A, SER31B, THR130A, THR130B, THR169A, THR169B, THR183A, THR183B, THR196A, THR196B, TRP166A, TRP166B, TRP76A, TRP76B, TYR172A, TYR172B, VAL179A, VAL179B, VAL182A, VAL182B, VAL191A, VAL191B, VAL197A, VAL197B, VAL200A, VAL200B
• A-D: ALA181A, ALA88D, GLY184A, LYS152D
• B-C: HIS36B, PRO155C
• B-D: ALA122B, ALA135B, ALA63B, ALA88D, ALA91D, ALA92D, ARG202D, ARG209D, ARG70B, ARG98D, ASN194D, ASP127B, ASP132B, ASP138B, ASP86D, GLN195D, GLN201D, GLU128B, GLU190D, GLU198D, GLU206D, GLU62B, GLY131B, ILE205D, ILE66B, LEU124B, LEU125B, LEU129B, LEU55B, LEU64B, LEU90D, LYS134B, LYS152D, LYS61B, LYS94D, PHE192D, PHE193D, PHE58B, PHE87D, PRO123B, PRO59B, PRO89D, SER60B, THR130B, THR52B, TYR56B, VAL191D
• C-D: ALA120C, ALA120D, ALA122C, ALA122D, ALA135C, ALA135D, ALA154C, ALA154D, ALA167C, ALA167D, ALA173C, ALA173D, ALA176C, ALA176D, ALA181C, ALA181D, ALA185C, ALA185D, ARG112C, ARG112D, ARG202C, ARG202D, ARG209C, ARG209D, ARG211C, ARG211D, ASN194C, ASN194D, ASN199C, ASN199D, ASP127C, ASP127D, ASP138C, ASP138D, ASP157C, ASP157D, ASP174C, ASP174D, CYS115C, CYS115D, GLN109C, GLN109D, GLN159C, GLN159D, GLN170C, GLN170D, GLN178C, GLN178D, GLN195C, GLN195D, GLN201C, GLN201D, GLN32C, GLN32D, GLU117C, GLU117D, GLU128C, GLU128D, GLU180C, GLU180D, GLU198C, GLU198D, GLU206C, GLU206D, GLY121C, GLY121D, GLY131C, GLY131D, GLY184C, GLY184D, GLY207C, GLY207D, HIS160C, HIS160D, HIS171C, HIS171D, ILE137C, ILE137D, ILE156C, ILE156D, ILE162C, ILE162D, ILE165C, ILE165D, ILE203C, ILE203D, ILE204C, ILE204D, ILE205C, ILE205D, ILE208C, ILE208D, ILE97C, LEU101D, LEU113C, LEU113D, LEU119C, LEU119D, LEU125C, LEU125D, LEU129C, LEU129D, LEU133C, LEU133D, LEU136C, LEU136D, LEU153D, LEU161C, LEU161D, LEU187C, LEU187D, LEU73C, LEU73D, LEU77C, LEU77D, LYS100C, LYS100D, LYS134C, LYS134D, PHE114C, PHE114D, PHE163C, PHE163D, PHE175C, PHE175D, PHE192C, PHE192D, PHE193C, PHE193D, PRO108C, PRO108D, PRO123C, PRO123D, PRO155C, PRO155D, PRO158C, PRO158D, PRO177C, PRO177D, PRO210D, SER111C, SER111D, SER141C, SER141D, SER168C, SER168D, SER31C, SER31D, THR130C, THR130D, THR169C, THR169D, THR183C, THR183D, THR196C, THR196D, TRP166C, TRP166D, TRP76C, TRP76D, TYR172C, TYR172D, VAL148D, VAL179C, VAL179D, VAL182C, VAL182D, VAL191C, VAL191D, VAL197C, VAL197D, VAL200C, VAL200D